miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5563 5' -65.4 NC_001806.1 + 24510 0.71 0.254425
Target:  5'- gCCGGGCCGUgcugccggcgcuggaCGgccgGGCGGCgGCCuCGg -3'
miRNA:   3'- aGGUCCGGCA---------------GCa---CCGCCGgCGG-GCg -5'
5563 5' -65.4 NC_001806.1 + 119541 0.71 0.256136
Target:  5'- aCCAGGCCGUCagcgggggcgccauGggGGCGGCUGa-CGCa -3'
miRNA:   3'- aGGUCCGGCAG--------------Ca-CCGCCGGCggGCG- -5'
5563 5' -65.4 NC_001806.1 + 134641 0.71 0.263074
Target:  5'- gCCAGGCUGUgcaCGUGGUccucguuGGCCGUcaggaCCGCc -3'
miRNA:   3'- aGGUCCGGCA---GCACCG-------CCGGCG-----GGCG- -5'
5563 5' -65.4 NC_001806.1 + 114937 0.71 0.263659
Target:  5'- aCC--GCCGUCGUGGCcacGGCaacCGUCCGCa -3'
miRNA:   3'- aGGucCGGCAGCACCG---CCG---GCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 23746 0.71 0.275582
Target:  5'- cCCAGGCCG-CGUgcGGCGGCgGCgaCGa -3'
miRNA:   3'- aGGUCCGGCaGCA--CCGCCGgCGg-GCg -5'
5563 5' -65.4 NC_001806.1 + 85266 0.7 0.281704
Target:  5'- uUCCuGGCCuccuugGUCGUGuuGGCCGaCCGCc -3'
miRNA:   3'- -AGGuCCGG------CAGCACcgCCGGCgGGCG- -5'
5563 5' -65.4 NC_001806.1 + 143409 0.7 0.281704
Target:  5'- gCCGGGUCG-CGgcucuuacGaGCGGCCcgGCCCGCg -3'
miRNA:   3'- aGGUCCGGCaGCa-------C-CGCCGG--CGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 50225 0.7 0.281704
Target:  5'- aCCGcGaCUGUCGc-GUGGCCGCCCGCu -3'
miRNA:   3'- aGGUcC-GGCAGCacCGCCGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 64133 0.7 0.287932
Target:  5'- cCCAGGgCGaUGUGGCGcauGCCGCgCGUg -3'
miRNA:   3'- aGGUCCgGCaGCACCGC---CGGCGgGCG- -5'
5563 5' -65.4 NC_001806.1 + 61591 0.7 0.287932
Target:  5'- aCgAGGCCGUCGUGuGCacGGCCucguCCCGg -3'
miRNA:   3'- aGgUCCGGCAGCAC-CG--CCGGc---GGGCg -5'
5563 5' -65.4 NC_001806.1 + 109944 0.7 0.287932
Target:  5'- cCCGGGCUG-CGaGGCacacGGCCGCCC-Ca -3'
miRNA:   3'- aGGUCCGGCaGCaCCG----CCGGCGGGcG- -5'
5563 5' -65.4 NC_001806.1 + 67461 0.7 0.291721
Target:  5'- gUCCAGGCCaagcaaccacagCGUGcUGGCCGCCCu- -3'
miRNA:   3'- -AGGUCCGGca----------GCACcGCCGGCGGGcg -5'
5563 5' -65.4 NC_001806.1 + 151687 0.7 0.294269
Target:  5'- gUCUcGGCCGggggGGCccgGGCUGCCCGCc -3'
miRNA:   3'- -AGGuCCGGCagcaCCG---CCGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 30281 0.7 0.300714
Target:  5'- cCCcGGCCccCGgGGCggagccGGCCGCCCGCc -3'
miRNA:   3'- aGGuCCGGcaGCaCCG------CCGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 1865 0.7 0.300714
Target:  5'- -aCAGGCgCG-CGUGcGCGGCCuCCaCGCg -3'
miRNA:   3'- agGUCCG-GCaGCAC-CGCCGGcGG-GCG- -5'
5563 5' -65.4 NC_001806.1 + 137204 0.7 0.300714
Target:  5'- uUCCGGGa---CGUGGCGGCCuuagaguccCCCGCa -3'
miRNA:   3'- -AGGUCCggcaGCACCGCCGGc--------GGGCG- -5'
5563 5' -65.4 NC_001806.1 + 73172 0.7 0.307267
Target:  5'- cUCaCAGGCCcUCGaGGCGcugaagacucGCCGCUCGCc -3'
miRNA:   3'- -AG-GUCCGGcAGCaCCGC----------CGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 98719 0.7 0.307267
Target:  5'- gUCCuGGCCGgCcUGGCGGCgGCCuucuuCGCc -3'
miRNA:   3'- -AGGuCCGGCaGcACCGCCGgCGG-----GCG- -5'
5563 5' -65.4 NC_001806.1 + 104905 0.7 0.313929
Target:  5'- cCCAGGCCGUgcUGGCguucguGGCCcucauCCCGCc -3'
miRNA:   3'- aGGUCCGGCAgcACCG------CCGGc----GGGCG- -5'
5563 5' -65.4 NC_001806.1 + 141417 0.7 0.313929
Target:  5'- aCCAGGCCGgggCGgcgcGCGGCCaaCCgGCg -3'
miRNA:   3'- aGGUCCGGCa--GCac--CGCCGGc-GGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.