miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5563 5' -65.4 NC_001806.1 + 73558 0.66 0.495849
Target:  5'- gCCuGGCCGaCGUGGCcGCCcaucuGCCCc- -3'
miRNA:   3'- aGGuCCGGCaGCACCGcCGG-----CGGGcg -5'
5563 5' -65.4 NC_001806.1 + 90884 0.66 0.495849
Target:  5'- aCguGGaCGcCGUGGCccgcgcGGCCGCCCa- -3'
miRNA:   3'- aGguCCgGCaGCACCG------CCGGCGGGcg -5'
5563 5' -65.4 NC_001806.1 + 43115 0.66 0.486915
Target:  5'- cUCCAcGGgaGUCc---CGGCCGCCCGCc -3'
miRNA:   3'- -AGGU-CCggCAGcaccGCCGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 23794 0.66 0.478058
Target:  5'- aCgGGGCCGcCG-GG-GGCCGCCUc- -3'
miRNA:   3'- aGgUCCGGCaGCaCCgCCGGCGGGcg -5'
5563 5' -65.4 NC_001806.1 + 22322 0.66 0.478058
Target:  5'- aCCAGGCCuGcuuccggaucUCG-GGC-GCCGCgCGCa -3'
miRNA:   3'- aGGUCCGG-C----------AGCaCCGcCGGCGgGCG- -5'
5563 5' -65.4 NC_001806.1 + 67522 0.66 0.478058
Target:  5'- cCUGGGCCGUCGcGGCgagagaucgggGGgCGCaggaCGCg -3'
miRNA:   3'- aGGUCCGGCAGCaCCG-----------CCgGCGg---GCG- -5'
5563 5' -65.4 NC_001806.1 + 42363 0.66 0.478058
Target:  5'- gUCCuugauGGCCugcagGUCGUacGUGGCC-CCCGCg -3'
miRNA:   3'- -AGGu----CCGG-----CAGCAc-CGCCGGcGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 57581 0.66 0.476296
Target:  5'- cCCGGGauggugcgagaGUUG-GGCGGCCGCCaagGCc -3'
miRNA:   3'- aGGUCCgg---------CAGCaCCGCCGGCGGg--CG- -5'
5563 5' -65.4 NC_001806.1 + 111521 0.66 0.476296
Target:  5'- aCCuuGGGCCGUCGggcacguacacgGGUGGCCGggCGUu -3'
miRNA:   3'- aGG--UCCGGCAGCa-----------CCGCCGGCggGCG- -5'
5563 5' -65.4 NC_001806.1 + 86079 0.67 0.469281
Target:  5'- gUCUAGcUCG-CGgagGGCGGCCaGCCgCGCg -3'
miRNA:   3'- -AGGUCcGGCaGCa--CCGCCGG-CGG-GCG- -5'
5563 5' -65.4 NC_001806.1 + 74861 0.67 0.469281
Target:  5'- gUCC-GGCCGUCcUGGCgacccugcgGGCCucccuGCCgGCg -3'
miRNA:   3'- -AGGuCCGGCAGcACCG---------CCGG-----CGGgCG- -5'
5563 5' -65.4 NC_001806.1 + 36836 0.67 0.469281
Target:  5'- cCCAGGCCGUaCGccgGGCccaCC-CCCGCc -3'
miRNA:   3'- aGGUCCGGCA-GCa--CCGcc-GGcGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 46431 0.67 0.469281
Target:  5'- gCCGcGGUCGggCGccUGGCGGCCaugcauGCCCGg -3'
miRNA:   3'- aGGU-CCGGCa-GC--ACCGCCGG------CGGGCg -5'
5563 5' -65.4 NC_001806.1 + 117871 0.67 0.469281
Target:  5'- -gCGGGCgaUGUCGgcGGgGGCCgaGCCCGUg -3'
miRNA:   3'- agGUCCG--GCAGCa-CCgCCGG--CGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 20464 0.67 0.469281
Target:  5'- aCCGGGaaGUCGgGGCccgGGCCccgcccccuGCCCGUu -3'
miRNA:   3'- aGGUCCggCAGCaCCG---CCGG---------CGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 117922 0.67 0.469281
Target:  5'- cUCCAGGgCGaagaugauauaaUCGUcGCGGuaCCGCCCGa -3'
miRNA:   3'- -AGGUCCgGC------------AGCAcCGCC--GGCGGGCg -5'
5563 5' -65.4 NC_001806.1 + 86382 0.67 0.469281
Target:  5'- cUCCgcGGGgCGcUCGgcuaacgcGGCGGCCGCuCCGg -3'
miRNA:   3'- -AGG--UCCgGC-AGCa-------CCGCCGGCG-GGCg -5'
5563 5' -65.4 NC_001806.1 + 93107 0.67 0.465793
Target:  5'- uUUCAGGCCGggaacUGggccagccugaugGGCGGCaaaaacgcgUGCCCGCu -3'
miRNA:   3'- -AGGUCCGGCa----GCa------------CCGCCG---------GCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 78685 0.67 0.464055
Target:  5'- cUCCuGGGCgcgcccguCGUCGUGGCgcuccgcaacaccacGGCCuuuuCCCGCg -3'
miRNA:   3'- -AGG-UCCG--------GCAGCACCG---------------CCGGc---GGGCG- -5'
5563 5' -65.4 NC_001806.1 + 34537 0.67 0.464055
Target:  5'- gCCGGGCCGcUCGUaagagccgcgaccCGGCCGCCgGg -3'
miRNA:   3'- aGGUCCGGC-AGCAcc-----------GCCGGCGGgCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.