miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5563 5' -65.4 NC_001806.1 + 135972 0.66 0.513934
Target:  5'- aCgAGGCg--CGaGGCGGCCGaCCCGg -3'
miRNA:   3'- aGgUCCGgcaGCaCCGCCGGC-GGGCg -5'
5563 5' -65.4 NC_001806.1 + 135753 0.67 0.426698
Target:  5'- aCCAcGGCCGUgCGgaaGGCcuGGCgaagcugcggCGCCCGCc -3'
miRNA:   3'- aGGU-CCGGCA-GCa--CCG--CCG----------GCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 135560 0.66 0.520327
Target:  5'- aUCCAccggucacggacucGGCCG-CcaGGuCGGCCGCgCGCu -3'
miRNA:   3'- -AGGU--------------CCGGCaGcaCC-GCCGGCGgGCG- -5'
5563 5' -65.4 NC_001806.1 + 134974 0.74 0.170403
Target:  5'- ---cGGCCGUCGcGGCGGCCaucccgguGCCCGa -3'
miRNA:   3'- agguCCGGCAGCaCCGCCGG--------CGGGCg -5'
5563 5' -65.4 NC_001806.1 + 134789 0.67 0.459723
Target:  5'- cCCAGGCgcgaCGUCGacgcgcgcgaugcUGGUGGCgGUaaaCCGCg -3'
miRNA:   3'- aGGUCCG----GCAGC-------------ACCGCCGgCG---GGCG- -5'
5563 5' -65.4 NC_001806.1 + 134641 0.71 0.263074
Target:  5'- gCCAGGCUGUgcaCGUGGUccucguuGGCCGUcaggaCCGCc -3'
miRNA:   3'- aGGUCCGGCA---GCACCG-------CCGGCG-----GGCG- -5'
5563 5' -65.4 NC_001806.1 + 134226 0.66 0.532282
Target:  5'- -aUAGGCCacgcaGUCGgagcgggggGGCGGCC-CCgGCa -3'
miRNA:   3'- agGUCCGG-----CAGCa--------CCGCCGGcGGgCG- -5'
5563 5' -65.4 NC_001806.1 + 132662 0.68 0.371126
Target:  5'- gCCGcGGCCGcuuacgccgcgcUCcUGGgGGCCugGCCCGCg -3'
miRNA:   3'- aGGU-CCGGC------------AGcACCgCCGG--CGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 132059 0.67 0.426698
Target:  5'- gUUgAGaGagCGUCGUGG-GGcCCGCCCGCc -3'
miRNA:   3'- -AGgUC-Cg-GCAGCACCgCC-GGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 131864 1.11 0.000347
Target:  5'- gUCCAGGCCGUCGUGGCGGCCGCCCGCg -3'
miRNA:   3'- -AGGUCCGGCAGCACCGCCGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 129443 0.68 0.394333
Target:  5'- aCUGGGCCG-CGUGGauGCguuaaugcuaCGCCUGCu -3'
miRNA:   3'- aGGUCCGGCaGCACCgcCG----------GCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 128535 0.66 0.532282
Target:  5'- -gCGGGCCGcagCcaGaCGGCgGCCCGCg -3'
miRNA:   3'- agGUCCGGCa--GcaCcGCCGgCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 128035 0.77 0.105155
Target:  5'- gCCAGGCCGacgaugccCGUGGCGGCCacgGCCCcCa -3'
miRNA:   3'- aGGUCCGGCa-------GCACCGCCGG---CGGGcG- -5'
5563 5' -65.4 NC_001806.1 + 127768 0.77 0.110442
Target:  5'- -gCGGGCC--UGUGGCGGCCGUCuCGCg -3'
miRNA:   3'- agGUCCGGcaGCACCGCCGGCGG-GCG- -5'
5563 5' -65.4 NC_001806.1 + 123199 0.66 0.511203
Target:  5'- cCCGGGUCGcCcgcaggGUGGCGgaauggaccgagauGCCGCCCacGCg -3'
miRNA:   3'- aGGUCCGGCaG------CACCGC--------------CGGCGGG--CG- -5'
5563 5' -65.4 NC_001806.1 + 122531 0.67 0.435032
Target:  5'- gUCC-GGCCGUg--GGUGGCCacguccaccuugGCCCGUu -3'
miRNA:   3'- -AGGuCCGGCAgcaCCGCCGG------------CGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 120327 0.72 0.220124
Target:  5'- aCgGGGCgGUCGggGGCGGCggguCGuCCCGCu -3'
miRNA:   3'- aGgUCCGgCAGCa-CCGCCG----GC-GGGCG- -5'
5563 5' -65.4 NC_001806.1 + 120124 0.77 0.111529
Target:  5'- aUCCGGGCCG-CGcuucagGGCGGCCcgcgaaucucacagcGCCUGCg -3'
miRNA:   3'- -AGGUCCGGCaGCa-----CCGCCGG---------------CGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 119541 0.71 0.256136
Target:  5'- aCCAGGCCGUCagcgggggcgccauGggGGCGGCUGa-CGCa -3'
miRNA:   3'- aGGUCCGGCAG--------------Ca-CCGCCGGCggGCG- -5'
5563 5' -65.4 NC_001806.1 + 118761 0.69 0.348869
Target:  5'- cCCuGGCCGcCcugaUGcGCGGCCGCCC-Cg -3'
miRNA:   3'- aGGuCCGGCaGc---AC-CGCCGGCGGGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.