miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5563 5' -65.4 NC_001806.1 + 151687 0.7 0.294269
Target:  5'- gUCUcGGCCGggggGGCccgGGCUGCCCGCc -3'
miRNA:   3'- -AGGuCCGGCagcaCCG---CCGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 151548 0.68 0.378757
Target:  5'- cCCGGGCgGcCGggGGCGGCgggGgCCGCg -3'
miRNA:   3'- aGGUCCGgCaGCa-CCGCCGg--CgGGCG- -5'
5563 5' -65.4 NC_001806.1 + 151448 0.66 0.502147
Target:  5'- --gGGGCgG-CGgcggGGCGGCCGCgggcgcgcuccugaCCGCg -3'
miRNA:   3'- aggUCCGgCaGCa---CCGCCGGCG--------------GGCG- -5'
5563 5' -65.4 NC_001806.1 + 151320 0.66 0.523077
Target:  5'- cUCUGGcGCCGgcUCGggcgGGgGGCUGUCCGg -3'
miRNA:   3'- -AGGUC-CGGC--AGCa---CCgCCGGCGGGCg -5'
5563 5' -65.4 NC_001806.1 + 150668 0.74 0.174473
Target:  5'- gCCGGGCCccgccgCGcUGGCGGCCGCCg-- -3'
miRNA:   3'- aGGUCCGGca----GC-ACCGCCGGCGGgcg -5'
5563 5' -65.4 NC_001806.1 + 147210 0.69 0.3636
Target:  5'- cCCcGGCgG-CGgaagaGGCGGCC-CCCGCg -3'
miRNA:   3'- aGGuCCGgCaGCa----CCGCCGGcGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 147024 0.69 0.327579
Target:  5'- -gCAGGUagCG-CGUGa-GGCCGCCCGCg -3'
miRNA:   3'- agGUCCG--GCaGCACcgCCGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 146078 0.66 0.504856
Target:  5'- gCCAGGUCaGUcCG-GGCGGgcaggCGCUCGCg -3'
miRNA:   3'- aGGUCCGG-CA-GCaCCGCCg----GCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 144949 0.78 0.09296
Target:  5'- gCCAacGGCCGgccccCGUGGCGGCCcgGCCCGg -3'
miRNA:   3'- aGGU--CCGGCa----GCACCGCCGG--CGGGCg -5'
5563 5' -65.4 NC_001806.1 + 143633 0.68 0.410317
Target:  5'- cUCCAGcGCCc-CGUccGGCGcGCCGCCCc- -3'
miRNA:   3'- -AGGUC-CGGcaGCA--CCGC-CGGCGGGcg -5'
5563 5' -65.4 NC_001806.1 + 143409 0.7 0.281704
Target:  5'- gCCGGGUCG-CGgcucuuacGaGCGGCCcgGCCCGCg -3'
miRNA:   3'- aGGUCCGGCaGCa-------C-CGCCGG--CGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 142347 0.67 0.44346
Target:  5'- uUCaCAGGUgUGUgGcUGGCGGCCuGCuuGCg -3'
miRNA:   3'- -AG-GUCCG-GCAgC-ACCGCCGG-CGggCG- -5'
5563 5' -65.4 NC_001806.1 + 141417 0.7 0.313929
Target:  5'- aCCAGGCCGgggCGgcgcGCGGCCaaCCgGCg -3'
miRNA:   3'- aGGUCCGGCa--GCac--CGCCGGc-GGgCG- -5'
5563 5' -65.4 NC_001806.1 + 140885 0.68 0.378757
Target:  5'- --aGGGcCCGUCGguacagGGCgGGCCGUcauCCGCg -3'
miRNA:   3'- aggUCC-GGCAGCa-----CCG-CCGGCG---GGCG- -5'
5563 5' -65.4 NC_001806.1 + 140666 0.66 0.532282
Target:  5'- aUCUggAGGCUuuuGUUGcUGcGCGG-CGCCCGCg -3'
miRNA:   3'- -AGG--UCCGG---CAGC-AC-CGCCgGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 140134 0.68 0.402275
Target:  5'- gCCAGGCgCGgcacaCGgGGUGGgCGCCgCGCc -3'
miRNA:   3'- aGGUCCG-GCa----GCaCCGCCgGCGG-GCG- -5'
5563 5' -65.4 NC_001806.1 + 137204 0.7 0.300714
Target:  5'- uUCCGGGa---CGUGGCGGCCuuagaguccCCCGCa -3'
miRNA:   3'- -AGGUCCggcaGCACCGCCGGc--------GGGCG- -5'
5563 5' -65.4 NC_001806.1 + 136970 0.68 0.421743
Target:  5'- --gGGGCCcgcgagcguggugcgGUCaUGGCGGCgGCCgGCg -3'
miRNA:   3'- aggUCCGG---------------CAGcACCGCCGgCGGgCG- -5'
5563 5' -65.4 NC_001806.1 + 136683 0.68 0.394333
Target:  5'- aCCA-GCCGUUGgGGCugcagaccgcgGGCCGCCaCGUg -3'
miRNA:   3'- aGGUcCGGCAGCaCCG-----------CCGGCGG-GCG- -5'
5563 5' -65.4 NC_001806.1 + 136534 0.66 0.495849
Target:  5'- -aCGGGCCGcUCG----GGCCGCCCGg -3'
miRNA:   3'- agGUCCGGC-AGCaccgCCGGCGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.