Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 82429 | 0.7 | 0.42073 |
Target: 5'- gGGCCC-GCCuccccguCCCCGCCCcGcAACGUAGa -3' miRNA: 3'- -CCGGGaCGG-------GGGGUGGGaC-UUGCAUU- -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 133746 | 0.69 | 0.522088 |
Target: 5'- cGGCCCcuugUGCUCCCC-CCCgUGGACu--- -3' miRNA: 3'- -CCGGG----ACGGGGGGuGGG-ACUUGcauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 72146 | 0.69 | 0.522088 |
Target: 5'- gGGCCCUGCgCCCCCugUCguacACGc-- -3' miRNA: 3'- -CCGGGACG-GGGGGugGGacu-UGCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 42389 | 0.69 | 0.522088 |
Target: 5'- uGGCCCccgcGCCCCCCagACgCUGGGCcUGAa -3' miRNA: 3'- -CCGGGa---CGGGGGG--UGgGACUUGcAUU- -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 22900 | 0.69 | 0.522088 |
Target: 5'- cGGCCCgccaGCCCCCCGCggCCgGAGgGa-- -3' miRNA: 3'- -CCGGGa---CGGGGGGUG--GGaCUUgCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 51001 | 0.69 | 0.522088 |
Target: 5'- aGCCCUucCCCCCCGCCCc---CGUAAg -3' miRNA: 3'- cCGGGAc-GGGGGGUGGGacuuGCAUU- -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 125397 | 0.69 | 0.512529 |
Target: 5'- -cCCCUGCCCCCCccACCCcaGACGa-- -3' miRNA: 3'- ccGGGACGGGGGG--UGGGacUUGCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 27064 | 0.69 | 0.512529 |
Target: 5'- gGGCCCgagGCCCgugCCCggGCCCUGGcccGCGg-- -3' miRNA: 3'- -CCGGGa--CGGG---GGG--UGGGACU---UGCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 29760 | 0.69 | 0.493635 |
Target: 5'- cGCCC-GCCCCCCGCC--GGACGc-- -3' miRNA: 3'- cCGGGaCGGGGGGUGGgaCUUGCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 151251 | 0.69 | 0.484307 |
Target: 5'- aGCCCcGCCCCCCggGCCCacgccGGGCGg-- -3' miRNA: 3'- cCGGGaCGGGGGG--UGGGa----CUUGCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 149780 | 0.69 | 0.484307 |
Target: 5'- cGCCCgGCCCCUCACCUcgcgcuggGGGCGg-- -3' miRNA: 3'- cCGGGaCGGGGGGUGGGa-------CUUGCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 143431 | 0.69 | 0.484307 |
Target: 5'- cGGCCCgGCCCgcgcuCCCACCCcccgGGcCGUGu -3' miRNA: 3'- -CCGGGaCGGG-----GGGUGGGa---CUuGCAUu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 73469 | 0.69 | 0.475065 |
Target: 5'- cGGCCCggccGCCgCCCUgcuggaguuuACCCUGAACa--- -3' miRNA: 3'- -CCGGGa---CGG-GGGG----------UGGGACUUGcauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 26621 | 0.69 | 0.475065 |
Target: 5'- uGGCCggacaGCCCCCCGCCC-GAGCc--- -3' miRNA: 3'- -CCGGga---CGGGGGGUGGGaCUUGcauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 49605 | 0.68 | 0.560956 |
Target: 5'- gGGCCC-GUUCCCCGCCCaaggUGGAgGUu- -3' miRNA: 3'- -CCGGGaCGGGGGGUGGG----ACUUgCAuu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 11119 | 0.68 | 0.551154 |
Target: 5'- gGGCCCU-CUCCCCGgcuUCCUGAACu--- -3' miRNA: 3'- -CCGGGAcGGGGGGU---GGGACUUGcauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 115219 | 0.68 | 0.541406 |
Target: 5'- cGGCCCUGCaaCCCCCggggacgcgccGCCggGGGCGUu- -3' miRNA: 3'- -CCGGGACG--GGGGG-----------UGGgaCUUGCAuu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 90896 | 0.68 | 0.541406 |
Target: 5'- uGGCCCgcgcgGCCgCCCACCU--GGCGUu- -3' miRNA: 3'- -CCGGGa----CGGgGGGUGGGacUUGCAuu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 51366 | 0.68 | 0.541406 |
Target: 5'- cGGCgggugUCUGCUCCCCACCCcGGAgGg-- -3' miRNA: 3'- -CCG-----GGACGGGGGGUGGGaCUUgCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 120825 | 0.68 | 0.580695 |
Target: 5'- uGCCCU-CCCCCCGCCCccGGCa--- -3' miRNA: 3'- cCGGGAcGGGGGGUGGGacUUGcauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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