Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5567 | 3' | -60.9 | NC_001806.1 | + | 119601 | 0.74 | 0.298857 |
Target: 5'- --uGGAGCCCCccGGCGgGGGCCGCu -3' miRNA: 3'- gcuCCUCGGGGcaCUGCgUCUGGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 21875 | 0.76 | 0.206344 |
Target: 5'- gCGAGGAcCCCCGcGGCcuccGCGGGCCGCAu -3' miRNA: 3'- -GCUCCUcGGGGCaCUG----CGUCUGGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 24694 | 0.79 | 0.139663 |
Target: 5'- --cGGcccGGCCCgGUGGCGCGGGCCGCGg -3' miRNA: 3'- gcuCC---UCGGGgCACUGCGUCUGGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 22576 | 0.79 | 0.125442 |
Target: 5'- gCGGGGAGCCCCGgcgccGGCGCAGaugacgagggggucGCCGCc -3' miRNA: 3'- -GCUCCUCGGGGCa----CUGCGUC--------------UGGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 79054 | 0.81 | 0.105937 |
Target: 5'- cCGAGGAGCuCCCGUuuGugGCGGGCgGCGa -3' miRNA: 3'- -GCUCCUCG-GGGCA--CugCGUCUGgCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 77305 | 0.7 | 0.472191 |
Target: 5'- gGAGGAGUUCCGgggcGCGCGGgagcucauccaacGCCGCAu -3' miRNA: 3'- gCUCCUCGGGGCac--UGCGUC-------------UGGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 113891 | 0.7 | 0.473097 |
Target: 5'- gCGGGGGGCcacgacCCCGUGuACGCGG-CgGCAu -3' miRNA: 3'- -GCUCCUCG------GGGCAC-UGCGUCuGgCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 147299 | 0.68 | 0.557704 |
Target: 5'- aGGGGGGUCCCG-GGCcCAcccuGGCCGCGc -3' miRNA: 3'- gCUCCUCGGGGCaCUGcGU----CUGGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 150811 | 0.69 | 0.548047 |
Target: 5'- -cGGGAGCUCCGcggaaGACcCAGGCCGCc -3' miRNA: 3'- gcUCCUCGGGGCa----CUGcGUCUGGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 119347 | 0.69 | 0.548047 |
Target: 5'- gGAGGAGCagcugacggccCCCGgcGGCGaCAcGACCGCGg -3' miRNA: 3'- gCUCCUCG-----------GGGCa-CUGC-GU-CUGGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 151764 | 0.69 | 0.538442 |
Target: 5'- gGGGGGGgCCCGUuuucGGCGUcuGGCCGCu -3' miRNA: 3'- gCUCCUCgGGGCA----CUGCGu-CUGGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 1922 | 0.69 | 0.538442 |
Target: 5'- cCGAGGccAGCaCCGUGcgGCGCAGGucCCGCGc -3' miRNA: 3'- -GCUCC--UCGgGGCAC--UGCGUCU--GGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 54 | 0.69 | 0.538442 |
Target: 5'- gGGGGGGgCCCGUuuucGGCGUcuGGCCGCu -3' miRNA: 3'- gCUCCUCgGGGCA----CUGCGu-CUGGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 106744 | 0.69 | 0.528896 |
Target: 5'- -uAGG-GUCCC-UGACGCGGGCCGaCAa -3' miRNA: 3'- gcUCCuCGGGGcACUGCGUCUGGC-GU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 21196 | 0.69 | 0.528896 |
Target: 5'- gCGGGGGGCCCuCGgguggGGCGCGGAgaCGgAg -3' miRNA: 3'- -GCUCCUCGGG-GCa----CUGCGUCUg-GCgU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 3581 | 0.69 | 0.528896 |
Target: 5'- gCGAGGAuCCCCGcGGCGCcguacccggcgGGcACCGCGc -3' miRNA: 3'- -GCUCCUcGGGGCaCUGCG-----------UC-UGGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 151457 | 0.69 | 0.519412 |
Target: 5'- gCGGGGcGGCCgCG-GGCGCGcuccuGACCGCGg -3' miRNA: 3'- -GCUCC-UCGGgGCaCUGCGU-----CUGGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 77854 | 0.69 | 0.509997 |
Target: 5'- uGGGGGGCCUCGaugGAUGCGGcgGCCGa- -3' miRNA: 3'- gCUCCUCGGGGCa--CUGCGUC--UGGCgu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 20407 | 0.69 | 0.509997 |
Target: 5'- cCGGGGGGCCCgGgGACGgccaaCGGGCgCGCGg -3' miRNA: 3'- -GCUCCUCGGGgCaCUGC-----GUCUG-GCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 59890 | 0.7 | 0.4822 |
Target: 5'- aCGAGGAGgCCaGUGACGUGGA-CGCc -3' miRNA: 3'- -GCUCCUCgGGgCACUGCGUCUgGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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