Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5567 | 3' | -60.9 | NC_001806.1 | + | 77146 | 0.68 | 0.606596 |
Target: 5'- gGAGGAGCUCgGggGGCGCGuGGCC-CAa -3' miRNA: 3'- gCUCCUCGGGgCa-CUGCGU-CUGGcGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 96111 | 0.68 | 0.606596 |
Target: 5'- gCGGGGAGCUCgaGUuGCGCcgcccGGACUGCAg -3' miRNA: 3'- -GCUCCUCGGGg-CAcUGCG-----UCUGGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 130862 | 0.68 | 0.606596 |
Target: 5'- gGAGGAccuucgGCCCCGaUGACGUgcuGGACCu-- -3' miRNA: 3'- gCUCCU------CGGGGC-ACUGCG---UCUGGcgu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 5598 | 0.67 | 0.616453 |
Target: 5'- --cGGGGgCCCGUGGcCGCGGcCCGUu -3' miRNA: 3'- gcuCCUCgGGGCACU-GCGUCuGGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 131494 | 0.67 | 0.626321 |
Target: 5'- cCGAGGGGCCaaguuggcccCCG-GACcCGGGCCGUu -3' miRNA: 3'- -GCUCCUCGG----------GGCaCUGcGUCUGGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 23107 | 0.67 | 0.626321 |
Target: 5'- cCGGGGcccugGGCCCCGcgcUGcCGCGGGacCCGCGc -3' miRNA: 3'- -GCUCC-----UCGGGGC---ACuGCGUCU--GGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 10413 | 0.67 | 0.626321 |
Target: 5'- cCGGGGGGUCCCGcUGGCG-GGAgUGCc -3' miRNA: 3'- -GCUCCUCGGGGC-ACUGCgUCUgGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 51390 | 0.67 | 0.636193 |
Target: 5'- gGAGGGGCUCCuuaGCGCGG-CCGUg -3' miRNA: 3'- gCUCCUCGGGGcacUGCGUCuGGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 23458 | 0.67 | 0.636193 |
Target: 5'- cCGcGGcGCCCCGggccgccgcGGCGCAGGCCcGCc -3' miRNA: 3'- -GCuCCuCGGGGCa--------CUGCGUCUGG-CGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 95614 | 0.67 | 0.646062 |
Target: 5'- gCGAGGuGCugCCCGcGACGUucGCCGCGg -3' miRNA: 3'- -GCUCCuCG--GGGCaCUGCGucUGGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 65301 | 0.67 | 0.654935 |
Target: 5'- aGGGGGGCCCCcaagggccucgguGggGACGUcGGCCGUc -3' miRNA: 3'- gCUCCUCGGGG-------------Ca-CUGCGuCUGGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 112394 | 0.67 | 0.655921 |
Target: 5'- cCGuGGccguGCCCCGUcuGACGCAuGCCGaCAc -3' miRNA: 3'- -GCuCCu---CGGGGCA--CUGCGUcUGGC-GU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 7435 | 0.67 | 0.655921 |
Target: 5'- -cGGGAGCCCCGgaccccACGCAccccCCGCGa -3' miRNA: 3'- gcUCCUCGGGGCac----UGCGUcu--GGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 4424 | 0.67 | 0.655921 |
Target: 5'- gGGGGGGUggCCCG-GGCGgGGGCgGCGu -3' miRNA: 3'- gCUCCUCG--GGGCaCUGCgUCUGgCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 90536 | 0.67 | 0.659859 |
Target: 5'- aCGGGGGaggcgcugugugagcGCCUCGgccugGACcCGGACCGCGc -3' miRNA: 3'- -GCUCCU---------------CGGGGCa----CUGcGUCUGGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 142207 | 0.67 | 0.665761 |
Target: 5'- uGAGGGGCUUCG-GcUGCAGGcCCGCu -3' miRNA: 3'- gCUCCUCGGGGCaCuGCGUCU-GGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 46061 | 0.66 | 0.675577 |
Target: 5'- gGAGGucCCCCG-GACGCGGcgucCCGUu -3' miRNA: 3'- gCUCCucGGGGCaCUGCGUCu---GGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 144818 | 0.66 | 0.675577 |
Target: 5'- aCGAGGGGCCCCc-GACcgcgGCGGuCCGg- -3' miRNA: 3'- -GCUCCUCGGGGcaCUG----CGUCuGGCgu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 71015 | 0.66 | 0.682429 |
Target: 5'- cCGAGGAcgcccccccgcaaaGCCCCGcGGC-C-GACCGCGu -3' miRNA: 3'- -GCUCCU--------------CGGGGCaCUGcGuCUGGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 97597 | 0.66 | 0.684383 |
Target: 5'- gGGGGAcuGCaucggcaaggacgCCCGcGACGCcauGGACCGCAu -3' miRNA: 3'- gCUCCU--CG-------------GGGCaCUGCG---UCUGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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