miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 3' -60.9 NC_001806.1 + 77854 0.69 0.509997
Target:  5'- uGGGGGGCCUCGaugGAUGCGGcgGCCGa- -3'
miRNA:   3'- gCUCCUCGGGGCa--CUGCGUC--UGGCgu -5'
5567 3' -60.9 NC_001806.1 + 79054 0.81 0.105937
Target:  5'- cCGAGGAGCuCCCGUuuGugGCGGGCgGCGa -3'
miRNA:   3'- -GCUCCUCG-GGGCA--CugCGUCUGgCGU- -5'
5567 3' -60.9 NC_001806.1 + 83275 0.68 0.586942
Target:  5'- gGAGGGGgUUCGggcgGGCGCGGAggaccCCGCAa -3'
miRNA:   3'- gCUCCUCgGGGCa---CUGCGUCU-----GGCGU- -5'
5567 3' -60.9 NC_001806.1 + 84412 0.68 0.577158
Target:  5'- uCGAGGcuGaCCCCGaGACGCAGcCCGgGg -3'
miRNA:   3'- -GCUCCu-C-GGGGCaCUGCGUCuGGCgU- -5'
5567 3' -60.9 NC_001806.1 + 90536 0.67 0.659859
Target:  5'- aCGGGGGaggcgcugugugagcGCCUCGgccugGACcCGGACCGCGc -3'
miRNA:   3'- -GCUCCU---------------CGGGGCa----CUGcGUCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 93594 0.71 0.411987
Target:  5'- -cGGGGGCCCCGgGACcgGCAuuugccGGCCGCAa -3'
miRNA:   3'- gcUCCUCGGGGCaCUG--CGU------CUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 95329 0.68 0.577158
Target:  5'- gCGGcGcGGGCCCCGacgacGACGgGGACCGUg -3'
miRNA:   3'- -GCU-C-CUCGGGGCa----CUGCgUCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 95614 0.67 0.646062
Target:  5'- gCGAGGuGCugCCCGcGACGUucGCCGCGg -3'
miRNA:   3'- -GCUCCuCG--GGGCaCUGCGucUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 96111 0.68 0.606596
Target:  5'- gCGGGGAGCUCgaGUuGCGCcgcccGGACUGCAg -3'
miRNA:   3'- -GCUCCUCGGGg-CAcUGCG-----UCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 97597 0.66 0.684383
Target:  5'- gGGGGAcuGCaucggcaaggacgCCCGcGACGCcauGGACCGCAu -3'
miRNA:   3'- gCUCCU--CG-------------GGGCaCUGCG---UCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 102170 0.68 0.577158
Target:  5'- gCGAGGAGCCgCUGgauaACGCccaGGGCCGUu -3'
miRNA:   3'- -GCUCCUCGG-GGCac--UGCG---UCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 106744 0.69 0.528896
Target:  5'- -uAGG-GUCCC-UGACGCGGGCCGaCAa -3'
miRNA:   3'- gcUCCuCGGGGcACUGCGUCUGGC-GU- -5'
5567 3' -60.9 NC_001806.1 + 111223 0.68 0.56741
Target:  5'- --cGGGGCCUCGaUGugGguGGCgGCGg -3'
miRNA:   3'- gcuCCUCGGGGC-ACugCguCUGgCGU- -5'
5567 3' -60.9 NC_001806.1 + 112394 0.67 0.655921
Target:  5'- cCGuGGccguGCCCCGUcuGACGCAuGCCGaCAc -3'
miRNA:   3'- -GCuCCu---CGGGGCA--CUGCGUcUGGC-GU- -5'
5567 3' -60.9 NC_001806.1 + 113891 0.7 0.473097
Target:  5'- gCGGGGGGCcacgacCCCGUGuACGCGG-CgGCAu -3'
miRNA:   3'- -GCUCCUCG------GGGCAC-UGCGUCuGgCGU- -5'
5567 3' -60.9 NC_001806.1 + 114168 0.71 0.411987
Target:  5'- gCGAGGAGugccccagcgaCCCCGUGACGgAccCCGCGc -3'
miRNA:   3'- -GCUCCUC-----------GGGGCACUGCgUcuGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 119347 0.69 0.548047
Target:  5'- gGAGGAGCagcugacggccCCCGgcGGCGaCAcGACCGCGg -3'
miRNA:   3'- gCUCCUCG-----------GGGCa-CUGC-GU-CUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 119601 0.74 0.298857
Target:  5'- --uGGAGCCCCccGGCGgGGGCCGCu -3'
miRNA:   3'- gcuCCUCGGGGcaCUGCgUCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 120683 0.73 0.341025
Target:  5'- --cGGA-CCCCGUcGCGCGGGCCGCu -3'
miRNA:   3'- gcuCCUcGGGGCAcUGCGUCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 128787 1.09 0.001168
Target:  5'- aCGAGGAGCCCCGUGACGCAGACCGCAg -3'
miRNA:   3'- -GCUCCUCGGGGCACUGCGUCUGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.