Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5567 | 3' | -60.9 | NC_001806.1 | + | 24694 | 0.79 | 0.139663 |
Target: 5'- --cGGcccGGCCCgGUGGCGCGGGCCGCGg -3' miRNA: 3'- gcuCC---UCGGGgCACUGCGUCUGGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 27691 | 0.71 | 0.395442 |
Target: 5'- gCGGGaAGCCCCGgggcaccGACGCAGGCCa-- -3' miRNA: 3'- -GCUCcUCGGGGCa------CUGCGUCUGGcgu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 30290 | 0.66 | 0.71539 |
Target: 5'- cCGGGGcggagccggccgcccGCCCCGcgGACGCGcGCCGUg -3' miRNA: 3'- -GCUCCu--------------CGGGGCa-CUGCGUcUGGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 32986 | 0.73 | 0.341025 |
Target: 5'- --cGGGGCCCCG-GGC-CGGGCCGCc -3' miRNA: 3'- gcuCCUCGGGGCaCUGcGUCUGGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 37350 | 0.66 | 0.71443 |
Target: 5'- cCGAuaauGGGGUCCUGggGGCGCAG-CgGCAg -3' miRNA: 3'- -GCU----CCUCGGGGCa-CUGCGUCuGgCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 41388 | 0.68 | 0.566437 |
Target: 5'- --cGGGGCCCUG-GGCGCGGaugcgauccgugaGCCGCc -3' miRNA: 3'- gcuCCUCGGGGCaCUGCGUC-------------UGGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 46061 | 0.66 | 0.675577 |
Target: 5'- gGAGGucCCCCG-GACGCGGcgucCCGUu -3' miRNA: 3'- gCUCCucGGGGCaCUGCGUCu---GGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 51390 | 0.67 | 0.636193 |
Target: 5'- gGAGGGGCUCCuuaGCGCGG-CCGUg -3' miRNA: 3'- gCUCCUCGGGGcacUGCGUCuGGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 51695 | 0.71 | 0.428953 |
Target: 5'- cCGAGGA-CCCCGUGG-GC-GACUGCGa -3' miRNA: 3'- -GCUCCUcGGGGCACUgCGuCUGGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 59890 | 0.7 | 0.4822 |
Target: 5'- aCGAGGAGgCCaGUGACGUGGA-CGCc -3' miRNA: 3'- -GCUCCUCgGGgCACUGCGUCUgGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 63453 | 0.66 | 0.71443 |
Target: 5'- aCGaAGGGGCuCCCG-GuCGU-GGCCGCAc -3' miRNA: 3'- -GC-UCCUCG-GGGCaCuGCGuCUGGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 65301 | 0.67 | 0.654935 |
Target: 5'- aGGGGGGCCCCcaagggccucgguGggGACGUcGGCCGUc -3' miRNA: 3'- gCUCCUCGGGG-------------Ca-CUGCGuCUGGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 65641 | 0.73 | 0.312449 |
Target: 5'- aGAGGGGCCCCGgcggccucccccuggGugGCugcgcugGGGCCGCc -3' miRNA: 3'- gCUCCUCGGGGCa--------------CugCG-------UCUGGCGu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 71015 | 0.66 | 0.682429 |
Target: 5'- cCGAGGAcgcccccccgcaaaGCCCCGcGGC-C-GACCGCGu -3' miRNA: 3'- -GCUCCU--------------CGGGGCaCUGcGuCUGGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 71340 | 0.66 | 0.695101 |
Target: 5'- gGAGGccuaugggcacGGCCCaCGccAgGCGGACCGCGa -3' miRNA: 3'- gCUCC-----------UCGGG-GCacUgCGUCUGGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 72519 | 0.7 | 0.464081 |
Target: 5'- gGGGGAGCCCUGcgucGGCGUGGGCCc-- -3' miRNA: 3'- gCUCCUCGGGGCa---CUGCGUCUGGcgu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 73211 | 0.66 | 0.71443 |
Target: 5'- ---cGAGcCCCCG-GGCGCAGACCu-- -3' miRNA: 3'- gcucCUC-GGGGCaCUGCGUCUGGcgu -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 76028 | 0.66 | 0.71443 |
Target: 5'- uCGGGuggacaccGAGCCCC-UGGCGCGGcuuCUGCGg -3' miRNA: 3'- -GCUC--------CUCGGGGcACUGCGUCu--GGCGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 77146 | 0.68 | 0.606596 |
Target: 5'- gGAGGAGCUCgGggGGCGCGuGGCC-CAa -3' miRNA: 3'- gCUCCUCGGGgCa-CUGCGU-CUGGcGU- -5' |
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5567 | 3' | -60.9 | NC_001806.1 | + | 77305 | 0.7 | 0.472191 |
Target: 5'- gGAGGAGUUCCGgggcGCGCGGgagcucauccaacGCCGCAu -3' miRNA: 3'- gCUCCUCGGGGCac--UGCGUC-------------UGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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