miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 3' -60.9 NC_001806.1 + 111223 0.68 0.56741
Target:  5'- --cGGGGCCUCGaUGugGguGGCgGCGg -3'
miRNA:   3'- gcuCCUCGGGGC-ACugCguCUGgCGU- -5'
5567 3' -60.9 NC_001806.1 + 106744 0.69 0.528896
Target:  5'- -uAGG-GUCCC-UGACGCGGGCCGaCAa -3'
miRNA:   3'- gcUCCuCGGGGcACUGCGUCUGGC-GU- -5'
5567 3' -60.9 NC_001806.1 + 102170 0.68 0.577158
Target:  5'- gCGAGGAGCCgCUGgauaACGCccaGGGCCGUu -3'
miRNA:   3'- -GCUCCUCGG-GGCac--UGCG---UCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 97597 0.66 0.684383
Target:  5'- gGGGGAcuGCaucggcaaggacgCCCGcGACGCcauGGACCGCAu -3'
miRNA:   3'- gCUCCU--CG-------------GGGCaCUGCG---UCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 96111 0.68 0.606596
Target:  5'- gCGGGGAGCUCgaGUuGCGCcgcccGGACUGCAg -3'
miRNA:   3'- -GCUCCUCGGGg-CAcUGCG-----UCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 95614 0.67 0.646062
Target:  5'- gCGAGGuGCugCCCGcGACGUucGCCGCGg -3'
miRNA:   3'- -GCUCCuCG--GGGCaCUGCGucUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 95329 0.68 0.577158
Target:  5'- gCGGcGcGGGCCCCGacgacGACGgGGACCGUg -3'
miRNA:   3'- -GCU-C-CUCGGGGCa----CUGCgUCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 93594 0.71 0.411987
Target:  5'- -cGGGGGCCCCGgGACcgGCAuuugccGGCCGCAa -3'
miRNA:   3'- gcUCCUCGGGGCaCUG--CGU------CUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 90536 0.67 0.659859
Target:  5'- aCGGGGGaggcgcugugugagcGCCUCGgccugGACcCGGACCGCGc -3'
miRNA:   3'- -GCUCCU---------------CGGGGCa----CUGcGUCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 84412 0.68 0.577158
Target:  5'- uCGAGGcuGaCCCCGaGACGCAGcCCGgGg -3'
miRNA:   3'- -GCUCCu-C-GGGGCaCUGCGUCuGGCgU- -5'
5567 3' -60.9 NC_001806.1 + 83275 0.68 0.586942
Target:  5'- gGAGGGGgUUCGggcgGGCGCGGAggaccCCGCAa -3'
miRNA:   3'- gCUCCUCgGGGCa---CUGCGUCU-----GGCGU- -5'
5567 3' -60.9 NC_001806.1 + 79054 0.81 0.105937
Target:  5'- cCGAGGAGCuCCCGUuuGugGCGGGCgGCGa -3'
miRNA:   3'- -GCUCCUCG-GGGCA--CugCGUCUGgCGU- -5'
5567 3' -60.9 NC_001806.1 + 77854 0.69 0.509997
Target:  5'- uGGGGGGCCUCGaugGAUGCGGcgGCCGa- -3'
miRNA:   3'- gCUCCUCGGGGCa--CUGCGUC--UGGCgu -5'
5567 3' -60.9 NC_001806.1 + 77305 0.7 0.472191
Target:  5'- gGAGGAGUUCCGgggcGCGCGGgagcucauccaacGCCGCAu -3'
miRNA:   3'- gCUCCUCGGGGCac--UGCGUC-------------UGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 77146 0.68 0.606596
Target:  5'- gGAGGAGCUCgGggGGCGCGuGGCC-CAa -3'
miRNA:   3'- gCUCCUCGGGgCa-CUGCGU-CUGGcGU- -5'
5567 3' -60.9 NC_001806.1 + 76028 0.66 0.71443
Target:  5'- uCGGGuggacaccGAGCCCC-UGGCGCGGcuuCUGCGg -3'
miRNA:   3'- -GCUC--------CUCGGGGcACUGCGUCu--GGCGU- -5'
5567 3' -60.9 NC_001806.1 + 73211 0.66 0.71443
Target:  5'- ---cGAGcCCCCG-GGCGCAGACCu-- -3'
miRNA:   3'- gcucCUC-GGGGCaCUGCGUCUGGcgu -5'
5567 3' -60.9 NC_001806.1 + 72519 0.7 0.464081
Target:  5'- gGGGGAGCCCUGcgucGGCGUGGGCCc-- -3'
miRNA:   3'- gCUCCUCGGGGCa---CUGCGUCUGGcgu -5'
5567 3' -60.9 NC_001806.1 + 71340 0.66 0.695101
Target:  5'- gGAGGccuaugggcacGGCCCaCGccAgGCGGACCGCGa -3'
miRNA:   3'- gCUCC-----------UCGGG-GCacUgCGUCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 71015 0.66 0.682429
Target:  5'- cCGAGGAcgcccccccgcaaaGCCCCGcGGC-C-GACCGCGu -3'
miRNA:   3'- -GCUCCU--------------CGGGGCaCUGcGuCUGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.