miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 3' -60.9 NC_001806.1 + 151764 0.69 0.538442
Target:  5'- gGGGGGGgCCCGUuuucGGCGUcuGGCCGCu -3'
miRNA:   3'- gCUCCUCgGGGCA----CUGCGu-CUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 151457 0.69 0.519412
Target:  5'- gCGGGGcGGCCgCG-GGCGCGcuccuGACCGCGg -3'
miRNA:   3'- -GCUCC-UCGGgGCaCUGCGU-----CUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 150811 0.69 0.548047
Target:  5'- -cGGGAGCUCCGcggaaGACcCAGGCCGCc -3'
miRNA:   3'- gcUCCUCGGGGCa----CUGcGUCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 147781 0.68 0.584004
Target:  5'- gCGGGGGGCCCgGggcggGGgGCGGagccuggcaugggcGCCGCGg -3'
miRNA:   3'- -GCUCCUCGGGgCa----CUgCGUC--------------UGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 147700 0.68 0.557704
Target:  5'- gGGGcGGGCCCCG-GAgGCGGcGCuCGCAc -3'
miRNA:   3'- gCUC-CUCGGGGCaCUgCGUC-UG-GCGU- -5'
5567 3' -60.9 NC_001806.1 + 147492 0.66 0.695101
Target:  5'- gCGGGGcGGCgCCGgagGGgGCGGcGCCGCGg -3'
miRNA:   3'- -GCUCC-UCGgGGCa--CUgCGUC-UGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 147299 0.68 0.557704
Target:  5'- aGGGGGGUCCCG-GGCcCAcccuGGCCGCGc -3'
miRNA:   3'- gCUCCUCGGGGCaCUGcGU----CUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 144818 0.66 0.675577
Target:  5'- aCGAGGGGCCCCc-GACcgcgGCGGuCCGg- -3'
miRNA:   3'- -GCUCCUCGGGGcaCUG----CGUCuGGCgu -5'
5567 3' -60.9 NC_001806.1 + 143619 0.66 0.721136
Target:  5'- cCGGGGGccguuaucuccagcGCCCCGUccGGCGC--GCCGCc -3'
miRNA:   3'- -GCUCCU--------------CGGGGCA--CUGCGucUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 142207 0.67 0.665761
Target:  5'- uGAGGGGCUUCG-GcUGCAGGcCCGCu -3'
miRNA:   3'- gCUCCUCGGGGCaCuGCGUCU-GGCGu -5'
5567 3' -60.9 NC_001806.1 + 131494 0.67 0.626321
Target:  5'- cCGAGGGGCCaaguuggcccCCG-GACcCGGGCCGUu -3'
miRNA:   3'- -GCUCCUCGG----------GGCaCUGcGUCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 130862 0.68 0.606596
Target:  5'- gGAGGAccuucgGCCCCGaUGACGUgcuGGACCu-- -3'
miRNA:   3'- gCUCCU------CGGGGC-ACUGCG---UCUGGcgu -5'
5567 3' -60.9 NC_001806.1 + 130196 0.66 0.724
Target:  5'- -aAGGGGCgCUGUGACGCGucGGCaUGCGa -3'
miRNA:   3'- gcUCCUCGgGGCACUGCGU--CUG-GCGU- -5'
5567 3' -60.9 NC_001806.1 + 128787 1.09 0.001168
Target:  5'- aCGAGGAGCCCCGUGACGCAGACCGCAg -3'
miRNA:   3'- -GCUCCUCGGGGCACUGCGUCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 120683 0.73 0.341025
Target:  5'- --cGGA-CCCCGUcGCGCGGGCCGCu -3'
miRNA:   3'- gcuCCUcGGGGCAcUGCGUCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 119601 0.74 0.298857
Target:  5'- --uGGAGCCCCccGGCGgGGGCCGCu -3'
miRNA:   3'- gcuCCUCGGGGcaCUGCgUCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 119347 0.69 0.548047
Target:  5'- gGAGGAGCagcugacggccCCCGgcGGCGaCAcGACCGCGg -3'
miRNA:   3'- gCUCCUCG-----------GGGCa-CUGC-GU-CUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 114168 0.71 0.411987
Target:  5'- gCGAGGAGugccccagcgaCCCCGUGACGgAccCCGCGc -3'
miRNA:   3'- -GCUCCUC-----------GGGGCACUGCgUcuGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 113891 0.7 0.473097
Target:  5'- gCGGGGGGCcacgacCCCGUGuACGCGG-CgGCAu -3'
miRNA:   3'- -GCUCCUCG------GGGCAC-UGCGUCuGgCGU- -5'
5567 3' -60.9 NC_001806.1 + 112394 0.67 0.655921
Target:  5'- cCGuGGccguGCCCCGUcuGACGCAuGCCGaCAc -3'
miRNA:   3'- -GCuCCu---CGGGGCA--CUGCGUcUGGC-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.