miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 3' -60.9 NC_001806.1 + 106744 0.69 0.528896
Target:  5'- -uAGG-GUCCC-UGACGCGGGCCGaCAa -3'
miRNA:   3'- gcUCCuCGGGGcACUGCGUCUGGC-GU- -5'
5567 3' -60.9 NC_001806.1 + 21196 0.69 0.528896
Target:  5'- gCGGGGGGCCCuCGgguggGGCGCGGAgaCGgAg -3'
miRNA:   3'- -GCUCCUCGGG-GCa----CUGCGUCUg-GCgU- -5'
5567 3' -60.9 NC_001806.1 + 3581 0.69 0.528896
Target:  5'- gCGAGGAuCCCCGcGGCGCcguacccggcgGGcACCGCGc -3'
miRNA:   3'- -GCUCCUcGGGGCaCUGCG-----------UC-UGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 54 0.69 0.538442
Target:  5'- gGGGGGGgCCCGUuuucGGCGUcuGGCCGCu -3'
miRNA:   3'- gCUCCUCgGGGCA----CUGCGu-CUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 1922 0.69 0.538442
Target:  5'- cCGAGGccAGCaCCGUGcgGCGCAGGucCCGCGc -3'
miRNA:   3'- -GCUCC--UCGgGGCAC--UGCGUCU--GGCGU- -5'
5567 3' -60.9 NC_001806.1 + 151764 0.69 0.538442
Target:  5'- gGGGGGGgCCCGUuuucGGCGUcuGGCCGCu -3'
miRNA:   3'- gCUCCUCgGGGCA----CUGCGu-CUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 119347 0.69 0.548047
Target:  5'- gGAGGAGCagcugacggccCCCGgcGGCGaCAcGACCGCGg -3'
miRNA:   3'- gCUCCUCG-----------GGGCa-CUGC-GU-CUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 150811 0.69 0.548047
Target:  5'- -cGGGAGCUCCGcggaaGACcCAGGCCGCc -3'
miRNA:   3'- gcUCCUCGGGGCa----CUGcGUCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 147299 0.68 0.557704
Target:  5'- aGGGGGGUCCCG-GGCcCAcccuGGCCGCGc -3'
miRNA:   3'- gCUCCUCGGGGCaCUGcGU----CUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 147700 0.68 0.557704
Target:  5'- gGGGcGGGCCCCG-GAgGCGGcGCuCGCAc -3'
miRNA:   3'- gCUC-CUCGGGGCaCUgCGUC-UG-GCGU- -5'
5567 3' -60.9 NC_001806.1 + 9958 0.68 0.557704
Target:  5'- uGGGGAcgcGUCCCGgaacuccaauUGACGgAGGCCGCc -3'
miRNA:   3'- gCUCCU---CGGGGC----------ACUGCgUCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 41388 0.68 0.566437
Target:  5'- --cGGGGCCCUG-GGCGCGGaugcgauccgugaGCCGCc -3'
miRNA:   3'- gcuCCUCGGGGCaCUGCGUC-------------UGGCGu -5'
5567 3' -60.9 NC_001806.1 + 111223 0.68 0.56741
Target:  5'- --cGGGGCCUCGaUGugGguGGCgGCGg -3'
miRNA:   3'- gcuCCUCGGGGC-ACugCguCUGgCGU- -5'
5567 3' -60.9 NC_001806.1 + 95329 0.68 0.577158
Target:  5'- gCGGcGcGGGCCCCGacgacGACGgGGACCGUg -3'
miRNA:   3'- -GCU-C-CUCGGGGCa----CUGCgUCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 9785 0.68 0.577158
Target:  5'- gGAGGGGCCCCGacgugcggGugGguGGgcucggccaaauCCGCGc -3'
miRNA:   3'- gCUCCUCGGGGCa-------CugCguCU------------GGCGU- -5'
5567 3' -60.9 NC_001806.1 + 84412 0.68 0.577158
Target:  5'- uCGAGGcuGaCCCCGaGACGCAGcCCGgGg -3'
miRNA:   3'- -GCUCCu-C-GGGGCaCUGCGUCuGGCgU- -5'
5567 3' -60.9 NC_001806.1 + 102170 0.68 0.577158
Target:  5'- gCGAGGAGCCgCUGgauaACGCccaGGGCCGUu -3'
miRNA:   3'- -GCUCCUCGG-GGCac--UGCG---UCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 147781 0.68 0.584004
Target:  5'- gCGGGGGGCCCgGggcggGGgGCGGagccuggcaugggcGCCGCGg -3'
miRNA:   3'- -GCUCCUCGGGgCa----CUgCGUC--------------UGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 83275 0.68 0.586942
Target:  5'- gGAGGGGgUUCGggcgGGCGCGGAggaccCCGCAa -3'
miRNA:   3'- gCUCCUCgGGGCa---CUGCGUCU-----GGCGU- -5'
5567 3' -60.9 NC_001806.1 + 14471 0.68 0.596757
Target:  5'- aCGAGGcuucccaaaAGCCCCa-GAUGcCAGACUGCGc -3'
miRNA:   3'- -GCUCC---------UCGGGGcaCUGC-GUCUGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.