Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5568 | 5' | -49.6 | NC_001806.1 | + | 125832 | 0.66 | 0.997197 |
Target: 5'- --gGCGCCuGACGCGCc----GCGGGc -3' miRNA: 3'- uuaUGUGGuCUGUGCGuuucaCGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 26813 | 0.69 | 0.96525 |
Target: 5'- -cUGCGCCugcGACGCGCGg---GCGGGg -3' miRNA: 3'- uuAUGUGGu--CUGUGCGUuucaCGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 50003 | 0.69 | 0.968568 |
Target: 5'- --cGCGCCuu-CACGCGGAGgcgcGCGGGu -3' miRNA: 3'- uuaUGUGGucuGUGCGUUUCa---CGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 72895 | 0.69 | 0.977162 |
Target: 5'- --gGCACCGGGCACGCuacucgGCcGGc -3' miRNA: 3'- uuaUGUGGUCUGUGCGuuuca-CGuCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 25516 | 0.68 | 0.981839 |
Target: 5'- --aGCGCgGGACGCGCcGGGgaggGCuGGg -3' miRNA: 3'- uuaUGUGgUCUGUGCGuUUCa---CGuCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 132969 | 0.68 | 0.983889 |
Target: 5'- --aAgACUGGACGCGCu-GGUGguGGc -3' miRNA: 3'- uuaUgUGGUCUGUGCGuuUCACguCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 108698 | 0.68 | 0.985758 |
Target: 5'- --cGCACCaAGGUACGCGAcGUGCucGGGg -3' miRNA: 3'- uuaUGUGG-UCUGUGCGUUuCACG--UCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 76674 | 0.68 | 0.987456 |
Target: 5'- -cUGgACCAGGCGCGCucGGcGgAGGa -3' miRNA: 3'- uuAUgUGGUCUGUGCGuuUCaCgUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 109684 | 0.67 | 0.990249 |
Target: 5'- --cACAcCCGGGCugGUucgcagcGAGGUGCAGu -3' miRNA: 3'- uuaUGU-GGUCUGugCG-------UUUCACGUCc -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 87489 | 0.7 | 0.949534 |
Target: 5'- --cGCAgCAGGCACGUAAAGacGCGGa -3' miRNA: 3'- uuaUGUgGUCUGUGCGUUUCa-CGUCc -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 21746 | 0.7 | 0.944968 |
Target: 5'- ----gACCAcGCACGCGAGGcGCGGGc -3' miRNA: 3'- uuaugUGGUcUGUGCGUUUCaCGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 51263 | 0.71 | 0.935045 |
Target: 5'- --aGCGCCGGACGCGCGgcgcGAGcucccUGCGGc -3' miRNA: 3'- uuaUGUGGUCUGUGCGU----UUC-----ACGUCc -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 102520 | 0.78 | 0.63399 |
Target: 5'- --cGCgGCCAGGCACGCcAGGUaGCGGGg -3' miRNA: 3'- uuaUG-UGGUCUGUGCGuUUCA-CGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 57306 | 0.75 | 0.780765 |
Target: 5'- --cGCGCCAGggcccccacGCACGCGAGGUGUGGc -3' miRNA: 3'- uuaUGUGGUC---------UGUGCGUUUCACGUCc -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 59361 | 0.75 | 0.790481 |
Target: 5'- --cGCACCGGcGCAUGCAGGGUGCu-- -3' miRNA: 3'- uuaUGUGGUC-UGUGCGUUUCACGucc -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 104004 | 0.74 | 0.827648 |
Target: 5'- --cAC-CCGGAgGCGCGAGGgacUGCAGGa -3' miRNA: 3'- uuaUGuGGUCUgUGCGUUUC---ACGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 122645 | 0.73 | 0.852641 |
Target: 5'- aAGUGCACCAG-CugGCGAaaggcuucggagcGGUGgAGGg -3' miRNA: 3'- -UUAUGUGGUCuGugCGUU-------------UCACgUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 76723 | 0.72 | 0.911999 |
Target: 5'- uGGUGgACCAGACggagaaggcGCGCGAGcucgacGUGCAGGc -3' miRNA: 3'- -UUAUgUGGUCUG---------UGCGUUU------CACGUCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 22632 | 0.71 | 0.924057 |
Target: 5'- --cGCACCGGGCgaGCGCGcGGUGCccgccGGGu -3' miRNA: 3'- uuaUGUGGUCUG--UGCGUuUCACG-----UCC- -5' |
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5568 | 5' | -49.6 | NC_001806.1 | + | 42630 | 0.71 | 0.935045 |
Target: 5'- -cUGCGCCGcggcGGCGuCGCGuccGGUGCGGGg -3' miRNA: 3'- uuAUGUGGU----CUGU-GCGUu--UCACGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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