miRNA display CGI


Results 61 - 80 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 3' -57.6 NC_001806.1 + 62230 0.7 0.572969
Target:  5'- aAGGGCCGUCagAGCGGgggagagGGCuggGGCCGCg -3'
miRNA:   3'- aUUCCGGUAGg-UCGCU-------UCG---UCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 2555 0.7 0.573985
Target:  5'- cGAGGCCAgggCCcGCGGgucaaacaugagGGcCGGUCGCCa -3'
miRNA:   3'- aUUCCGGUa--GGuCGCU------------UC-GUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 1561 0.7 0.58417
Target:  5'- -cGGGCCGggCCGGCGc-GCA-CCGCCu -3'
miRNA:   3'- auUCCGGUa-GGUCGCuuCGUcGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 77784 0.7 0.59439
Target:  5'- --uGGCCc-UCAGCGAcGCccaGGCCGCCa -3'
miRNA:   3'- auuCCGGuaGGUCGCUuCG---UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 83822 0.7 0.59439
Target:  5'- cGGGGUCGgcgcgggaUCCGGCac-GCAGCCGUCg -3'
miRNA:   3'- aUUCCGGU--------AGGUCGcuuCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 137685 0.7 0.59439
Target:  5'- --cGGCCAcCCA-CGggGC-GCUGCCg -3'
miRNA:   3'- auuCCGGUaGGUcGCuuCGuCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 146749 0.7 0.601561
Target:  5'- gGGGGUCAUCCAGaggcuguuccacucCGAcgcGGgGGCCGUCg -3'
miRNA:   3'- aUUCCGGUAGGUC--------------GCU---UCgUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 146074 0.7 0.604638
Target:  5'- aGAGGCCAggucagUCCgGGCG-GGCAGgCGCUc -3'
miRNA:   3'- aUUCCGGU------AGG-UCGCuUCGUCgGCGG- -5'
5571 3' -57.6 NC_001806.1 + 86657 0.7 0.604638
Target:  5'- --cGGCCGU-CAGCccGGCGGCCGUg -3'
miRNA:   3'- auuCCGGUAgGUCGcuUCGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 21917 0.7 0.604638
Target:  5'- -cGGGCCcgCgCGGCGGuGGcCGGCCGCg -3'
miRNA:   3'- auUCCGGuaG-GUCGCU-UC-GUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 150698 0.7 0.604638
Target:  5'- --uGGCCAgUCCcGCccccGAGGCGGCCcGCCc -3'
miRNA:   3'- auuCCGGU-AGGuCG----CUUCGUCGG-CGG- -5'
5571 3' -57.6 NC_001806.1 + 89315 0.7 0.604638
Target:  5'- --uGGCCGccgacuuuccUCCGGgGGacAGCgGGCCGCCg -3'
miRNA:   3'- auuCCGGU----------AGGUCgCU--UCG-UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 67242 0.7 0.604638
Target:  5'- gUGAGGCaggUCGGCGggGU-GCCGCa -3'
miRNA:   3'- -AUUCCGguaGGUCGCuuCGuCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 4749 0.7 0.604638
Target:  5'- cGGGGCCcggucgCCGGCGgcGuCGGCUGCg -3'
miRNA:   3'- aUUCCGGua----GGUCGCuuC-GUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 74919 0.69 0.614906
Target:  5'- cGAGGCCGUUCGG-GggGC-GCCcCCu -3'
miRNA:   3'- aUUCCGGUAGGUCgCuuCGuCGGcGG- -5'
5571 3' -57.6 NC_001806.1 + 63379 0.69 0.614906
Target:  5'- aGAGGUUGgagCCGGCGAu--GGCCGCCc -3'
miRNA:   3'- aUUCCGGUa--GGUCGCUucgUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 92859 0.69 0.614906
Target:  5'- --cGGCCAUCaucGCGggGUc-CCGCCg -3'
miRNA:   3'- auuCCGGUAGgu-CGCuuCGucGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 31104 0.69 0.614906
Target:  5'- -cGGGCCGcgguccCCGGCuGGAGCcGCCGCa -3'
miRNA:   3'- auUCCGGUa-----GGUCG-CUUCGuCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 4288 0.69 0.614906
Target:  5'- cGGGGCUGcCCGGCcguGAAGCGGCCcguggcgucgcgGCCg -3'
miRNA:   3'- aUUCCGGUaGGUCG---CUUCGUCGG------------CGG- -5'
5571 3' -57.6 NC_001806.1 + 134865 0.69 0.622102
Target:  5'- -cAGGCCA---GGCGGAGCAGCgucugcuggcuaauCGCCu -3'
miRNA:   3'- auUCCGGUaggUCGCUUCGUCG--------------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.