Results 1 - 20 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5571 | 5' | -58.1 | NC_001806.1 | + | 127024 | 1.11 | 0.001412 |
Target: 5'- gACGACACGCUCGCCGAGCUAUGGGCCu -3' miRNA: 3'- -UGCUGUGCGAGCGGCUCGAUACCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 107016 | 0.81 | 0.152137 |
Target: 5'- cGCG-CGCGCUUGCCGGGUUGgccgcccgcgGGGCCg -3' miRNA: 3'- -UGCuGUGCGAGCGGCUCGAUa---------CCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 133447 | 0.78 | 0.225608 |
Target: 5'- cGCGACACGCUgCGaCGGGUccUGGGCCu -3' miRNA: 3'- -UGCUGUGCGA-GCgGCUCGauACCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 106870 | 0.76 | 0.285473 |
Target: 5'- -gGACGCGggCGCCGAGCa--GGGCCc -3' miRNA: 3'- ugCUGUGCgaGCGGCUCGauaCCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 116907 | 0.76 | 0.305725 |
Target: 5'- uACGAgGCGCUCGUCGccuGGCUGacccacgcGGGCCa -3' miRNA: 3'- -UGCUgUGCGAGCGGC---UCGAUa-------CCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 47583 | 0.75 | 0.337388 |
Target: 5'- uACGAaGCGCUcucucguuucuuccaCGCCGAGCUAcGGGCg -3' miRNA: 3'- -UGCUgUGCGA---------------GCGGCUCGAUaCCCGg -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 132148 | 0.75 | 0.36031 |
Target: 5'- gGCGGCGCGCgUUGCCGAgcaucccgacgcgcgGCUggcGUGGGCg -3' miRNA: 3'- -UGCUGUGCG-AGCGGCU---------------CGA---UACCCGg -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 23131 | 0.74 | 0.414442 |
Target: 5'- cGCGGgaccCGCGCcUGCCGAGCUccGcGGCCg -3' miRNA: 3'- -UGCU----GUGCGaGCGGCUCGAuaC-CCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 52761 | 0.74 | 0.414442 |
Target: 5'- aACGACcCGgUCGCCGAGCcccccgcUGcGGCCa -3' miRNA: 3'- -UGCUGuGCgAGCGGCUCGau-----AC-CCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 147645 | 0.74 | 0.397514 |
Target: 5'- cACGGCGCGCgucCGCgGGGCgg-GcGGCCg -3' miRNA: 3'- -UGCUGUGCGa--GCGgCUCGauaC-CCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 37906 | 0.74 | 0.397514 |
Target: 5'- cGCGcCACGcCUCGCCauggGGGCgccgGGGCCg -3' miRNA: 3'- -UGCuGUGC-GAGCGG----CUCGaua-CCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 32928 | 0.73 | 0.449586 |
Target: 5'- aACcACACGCaugCGCCGGGCcguUGUgGGGCCc -3' miRNA: 3'- -UGcUGUGCGa--GCGGCUCG---AUA-CCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 125905 | 0.73 | 0.458627 |
Target: 5'- gGCGGcCACGCaaaaccagGCCGAcugccaGCUAUGGGCCc -3' miRNA: 3'- -UGCU-GUGCGag------CGGCU------CGAUACCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 76328 | 0.72 | 0.505201 |
Target: 5'- gGCGGCG-GC-CGCCGAGCUuguccGGGCa -3' miRNA: 3'- -UGCUGUgCGaGCGGCUCGAua---CCCGg -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 24973 | 0.72 | 0.505201 |
Target: 5'- gGCGGCGCGUUCGagggggaCGGgguGCUGUaacGGGCCg -3' miRNA: 3'- -UGCUGUGCGAGCg------GCU---CGAUA---CCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 130220 | 0.72 | 0.495716 |
Target: 5'- uGCGACACG-UCGCUGGGgCgg-GGGUCg -3' miRNA: 3'- -UGCUGUGCgAGCGGCUC-GauaCCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 132664 | 0.72 | 0.486311 |
Target: 5'- cGCGGC-CGCUuaCGCCGcGCUccuggGGGCCu -3' miRNA: 3'- -UGCUGuGCGA--GCGGCuCGAua---CCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 35826 | 0.72 | 0.48071 |
Target: 5'- cGCGugGCGgccuccuagggucaaUUCGCgCGAGCUGUacaGGGCCc -3' miRNA: 3'- -UGCugUGC---------------GAGCG-GCUCGAUA---CCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 26964 | 0.72 | 0.476993 |
Target: 5'- cCGcCugGCgCGCCGcGGCUcGUGGGCCc -3' miRNA: 3'- uGCuGugCGaGCGGC-UCGA-UACCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 129230 | 0.72 | 0.505201 |
Target: 5'- aGCGACGCgGUUCGCUGAGUca--GGCCu -3' miRNA: 3'- -UGCUGUG-CGAGCGGCUCGauacCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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