Results 41 - 60 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5571 | 5' | -58.1 | NC_001806.1 | + | 47583 | 0.75 | 0.337388 |
Target: 5'- uACGAaGCGCUcucucguuucuuccaCGCCGAGCUAcGGGCg -3' miRNA: 3'- -UGCUgUGCGA---------------GCGGCUCGAUaCCCGg -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 116907 | 0.76 | 0.305725 |
Target: 5'- uACGAgGCGCUCGUCGccuGGCUGacccacgcGGGCCa -3' miRNA: 3'- -UGCUgUGCGAGCGGC---UCGAUa-------CCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 106870 | 0.76 | 0.285473 |
Target: 5'- -gGACGCGggCGCCGAGCa--GGGCCc -3' miRNA: 3'- ugCUGUGCgaGCGGCUCGauaCCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 133447 | 0.78 | 0.225608 |
Target: 5'- cGCGACACGCUgCGaCGGGUccUGGGCCu -3' miRNA: 3'- -UGCUGUGCGA-GCgGCUCGauACCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 107016 | 0.81 | 0.152137 |
Target: 5'- cGCG-CGCGCUUGCCGGGUUGgccgcccgcgGGGCCg -3' miRNA: 3'- -UGCuGUGCGAGCGGCUCGAUa---------CCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 26964 | 0.72 | 0.476993 |
Target: 5'- cCGcCugGCgCGCCGcGGCUcGUGGGCCc -3' miRNA: 3'- uGCuGugCGaGCGGC-UCGA-UACCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 35826 | 0.72 | 0.48071 |
Target: 5'- cGCGugGCGgccuccuagggucaaUUCGCgCGAGCUGUacaGGGCCc -3' miRNA: 3'- -UGCugUGC---------------GAGCG-GCUCGAUA---CCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 25924 | 0.71 | 0.573492 |
Target: 5'- gGCGuGCGCGCgcgCGgCGGGCgugggggcgGGGCCg -3' miRNA: 3'- -UGC-UGUGCGa--GCgGCUCGaua------CCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 52528 | 0.71 | 0.573492 |
Target: 5'- uCGugGCGuCUCGCCGGacgacgugguccGCg--GGGCCu -3' miRNA: 3'- uGCugUGC-GAGCGGCU------------CGauaCCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 2666 | 0.71 | 0.54387 |
Target: 5'- gGCGGCcgcggGCGC-CGCCGuGUggcUGGGCCc -3' miRNA: 3'- -UGCUG-----UGCGaGCGGCuCGau-ACCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 103155 | 0.71 | 0.534103 |
Target: 5'- aGCGGCA-GC-CGCUGuGCgcUGGGCCu -3' miRNA: 3'- -UGCUGUgCGaGCGGCuCGauACCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 21755 | 0.71 | 0.5244 |
Target: 5'- cGCGAgGCGCgggcCGUCGGGCg--GGGUCc -3' miRNA: 3'- -UGCUgUGCGa---GCGGCUCGauaCCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 94727 | 0.71 | 0.5244 |
Target: 5'- gGCGGuaccugcccCACGC-CGCCGGGCUGUcGGacGCCg -3' miRNA: 3'- -UGCU---------GUGCGaGCGGCUCGAUA-CC--CGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 103821 | 0.72 | 0.514764 |
Target: 5'- gGCGACGgGCUCGCUGGGUccUAggcucaaugGGGaCCg -3' miRNA: 3'- -UGCUGUgCGAGCGGCUCG--AUa--------CCC-GG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 97739 | 0.72 | 0.514764 |
Target: 5'- aGCaACACGCUCGCgGAGCUGUacgugcGGGa- -3' miRNA: 3'- -UGcUGUGCGAGCGgCUCGAUA------CCCgg -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 129230 | 0.72 | 0.505201 |
Target: 5'- aGCGACGCgGUUCGCUGAGUca--GGCCu -3' miRNA: 3'- -UGCUGUG-CGAGCGGCUCGauacCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 76328 | 0.72 | 0.505201 |
Target: 5'- gGCGGCG-GC-CGCCGAGCUuguccGGGCa -3' miRNA: 3'- -UGCUGUgCGaGCGGCUCGAua---CCCGg -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 24973 | 0.72 | 0.505201 |
Target: 5'- gGCGGCGCGUUCGagggggaCGGgguGCUGUaacGGGCCg -3' miRNA: 3'- -UGCUGUGCGAGCg------GCU---CGAUA---CCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 130220 | 0.72 | 0.495716 |
Target: 5'- uGCGACACG-UCGCUGGGgCgg-GGGUCg -3' miRNA: 3'- -UGCUGUGCgAGCGGCUC-GauaCCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 132664 | 0.72 | 0.486311 |
Target: 5'- cGCGGC-CGCUuaCGCCGcGCUccuggGGGCCu -3' miRNA: 3'- -UGCUGuGCGA--GCGGCuCGAua---CCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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