miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 5' -58.1 NC_001806.1 + 41105 0.7 0.623577
Target:  5'- cCGGaaccCACGgaCGCCGGGCc--GGGCCg -3'
miRNA:   3'- uGCU----GUGCgaGCGGCUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 41606 0.68 0.703617
Target:  5'- aGCGcCGCGaUCGCCGGGggugugGGGCCc -3'
miRNA:   3'- -UGCuGUGCgAGCGGCUCgaua--CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 42798 0.68 0.742503
Target:  5'- gGCGACGucgucCGCUCGCuCGAaGCgacagacgaacAUGGGUCg -3'
miRNA:   3'- -UGCUGU-----GCGAGCG-GCU-CGa----------UACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 44118 0.68 0.703617
Target:  5'- cCGGuccCGCGCUCGCuCGGGg---GGGCCu -3'
miRNA:   3'- uGCU---GUGCGAGCG-GCUCgauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 45961 0.66 0.823697
Target:  5'- -aGACACGCUCGCgCcAGag--GGGCg -3'
miRNA:   3'- ugCUGUGCGAGCG-GcUCgauaCCCGg -5'
5571 5' -58.1 NC_001806.1 + 47583 0.75 0.337388
Target:  5'- uACGAaGCGCUcucucguuucuuccaCGCCGAGCUAcGGGCg -3'
miRNA:   3'- -UGCUgUGCGA---------------GCGGCUCGAUaCCCGg -5'
5571 5' -58.1 NC_001806.1 + 47841 0.69 0.67381
Target:  5'- cGCGAgauccuaugggcCGCGUaCGCCGAGCagaugAUGcGGCCc -3'
miRNA:   3'- -UGCU------------GUGCGaGCGGCUCGa----UAC-CCGG- -5'
5571 5' -58.1 NC_001806.1 + 50227 0.68 0.732899
Target:  5'- cGCGACuguCGCgUgGCCGcccGCUAUGccGGCCg -3'
miRNA:   3'- -UGCUGu--GCG-AgCGGCu--CGAUAC--CCGG- -5'
5571 5' -58.1 NC_001806.1 + 50658 0.66 0.823697
Target:  5'- -gGACGCGCaccggCGCCGGGaCgacgcgGcGGCCa -3'
miRNA:   3'- ugCUGUGCGa----GCGGCUC-Gaua---C-CCGG- -5'
5571 5' -58.1 NC_001806.1 + 51138 0.68 0.703617
Target:  5'- -aGGCGCGCga-CCGGGCUggGaGGCCc -3'
miRNA:   3'- ugCUGUGCGagcGGCUCGAuaC-CCGG- -5'
5571 5' -58.1 NC_001806.1 + 51766 0.66 0.840093
Target:  5'- cUGGCGCGCacccCGUucaaGAGCg--GGGCCg -3'
miRNA:   3'- uGCUGUGCGa---GCGg---CUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 52528 0.71 0.573492
Target:  5'- uCGugGCGuCUCGCCGGacgacgugguccGCg--GGGCCu -3'
miRNA:   3'- uGCugUGC-GAGCGGCU------------CGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 52761 0.74 0.414442
Target:  5'- aACGACcCGgUCGCCGAGCcccccgcUGcGGCCa -3'
miRNA:   3'- -UGCUGuGCgAGCGGCUCGau-----AC-CCGG- -5'
5571 5' -58.1 NC_001806.1 + 55190 0.66 0.848021
Target:  5'- gGCGuCAC-CUCGCCGAuaaucaGCcgcUGGGUCg -3'
miRNA:   3'- -UGCuGUGcGAGCGGCU------CGau-ACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 57028 0.68 0.703617
Target:  5'- gGC-ACugGgUgGCCGGGCccgGGGCCg -3'
miRNA:   3'- -UGcUGugCgAgCGGCUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 61530 0.67 0.788946
Target:  5'- cCGuACACGCg-GUCGGGCgg-GGGCUu -3'
miRNA:   3'- uGC-UGUGCGagCGGCUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 65173 0.67 0.796088
Target:  5'- gACGAC-CGgUCGuCCGAGaCgaacuccgcgGGGCCg -3'
miRNA:   3'- -UGCUGuGCgAGC-GGCUC-Gaua-------CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 66791 0.69 0.663796
Target:  5'- aACGcACAUGCcgggaggaUCacgGCCGAGCg--GGGCCg -3'
miRNA:   3'- -UGC-UGUGCG--------AG---CGGCUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 71945 0.7 0.603475
Target:  5'- -gGACGCGCgCGaCCGcgGGCccUGGGCCg -3'
miRNA:   3'- ugCUGUGCGaGC-GGC--UCGauACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 72122 0.7 0.613519
Target:  5'- cAC-ACACGUucuUCGCCG-GCccGUGGGCCc -3'
miRNA:   3'- -UGcUGUGCG---AGCGGCuCGa-UACCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.