miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 5' -58.1 NC_001806.1 + 41105 0.7 0.623577
Target:  5'- cCGGaaccCACGgaCGCCGGGCc--GGGCCg -3'
miRNA:   3'- uGCU----GUGCgaGCGGCUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 93566 0.7 0.633642
Target:  5'- gACGACaACGCgaCGCCGuucGGCggcccggGGGCCc -3'
miRNA:   3'- -UGCUG-UGCGa-GCGGC---UCGaua----CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 133248 0.69 0.643705
Target:  5'- gACGGC-CGUgggaGCCGuGCUuaGGGCCa -3'
miRNA:   3'- -UGCUGuGCGag--CGGCuCGAuaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 27304 0.69 0.653759
Target:  5'- cCGGCcaaccaGCGUcCGCCGAGUcuUcgGGGCCc -3'
miRNA:   3'- uGCUG------UGCGaGCGGCUCG--AuaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 85999 0.69 0.660788
Target:  5'- gGCGACggcgucucccggggGCGCUUgGCCGGGgaGggcaGGGCCg -3'
miRNA:   3'- -UGCUG--------------UGCGAG-CGGCUCgaUa---CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 66791 0.69 0.663796
Target:  5'- aACGcACAUGCcgggaggaUCacgGCCGAGCg--GGGCCg -3'
miRNA:   3'- -UGC-UGUGCG--------AG---CGGCUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 47841 0.69 0.67381
Target:  5'- cGCGAgauccuaugggcCGCGUaCGCCGAGCagaugAUGcGGCCc -3'
miRNA:   3'- -UGCU------------GUGCGaGCGGCUCGa----UAC-CCGG- -5'
5571 5' -58.1 NC_001806.1 + 30403 0.69 0.681796
Target:  5'- gUGGCGCGCggcucggggggGCCGGGCguggaggGUGGGCa -3'
miRNA:   3'- uGCUGUGCGag---------CGGCUCGa------UACCCGg -5'
5571 5' -58.1 NC_001806.1 + 139113 0.69 0.683789
Target:  5'- cUGAC-CgGCUCGCCGcGCgggGGGCUg -3'
miRNA:   3'- uGCUGuG-CGAGCGGCuCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 24857 0.69 0.683789
Target:  5'- aGCGGCACcguGCUgGCgGcGGCgg-GGGCCg -3'
miRNA:   3'- -UGCUGUG---CGAgCGgC-UCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 119032 0.69 0.683789
Target:  5'- gGCGGCGCuGCgccuugCGUgGGGCUcgGGGgCg -3'
miRNA:   3'- -UGCUGUG-CGa-----GCGgCUCGAuaCCCgG- -5'
5571 5' -58.1 NC_001806.1 + 21482 0.69 0.693728
Target:  5'- gACGACGCaGCcgaCGCCGccGGCgaccGGGCCc -3'
miRNA:   3'- -UGCUGUG-CGa--GCGGC--UCGaua-CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 22543 0.69 0.693728
Target:  5'- uUGGCGCGCgagaaCGCgGcGCUGacggGGGCCg -3'
miRNA:   3'- uGCUGUGCGa----GCGgCuCGAUa---CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 78901 0.69 0.694719
Target:  5'- cGCGccugucCGCGCucaUCGCCGAGCggccccucgcccgGGGCCc -3'
miRNA:   3'- -UGCu-----GUGCG---AGCGGCUCGaua----------CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 44118 0.68 0.703617
Target:  5'- cCGGuccCGCGCUCGCuCGGGg---GGGCCu -3'
miRNA:   3'- uGCU---GUGCGAGCG-GCUCgauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 41606 0.68 0.703617
Target:  5'- aGCGcCGCGaUCGCCGGGggugugGGGCCc -3'
miRNA:   3'- -UGCuGUGCgAGCGGCUCgaua--CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 24307 0.68 0.703617
Target:  5'- gGCGGCGCGggaccugCGCCGcacgguGCUGgccucGGGCCg -3'
miRNA:   3'- -UGCUGUGCga-----GCGGCu-----CGAUa----CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 57028 0.68 0.703617
Target:  5'- gGC-ACugGgUgGCCGGGCccgGGGCCg -3'
miRNA:   3'- -UGcUGugCgAgCGGCUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 51138 0.68 0.703617
Target:  5'- -aGGCGCGCga-CCGGGCUggGaGGCCc -3'
miRNA:   3'- ugCUGUGCGagcGGCUCGAuaC-CCGG- -5'
5571 5' -58.1 NC_001806.1 + 150854 0.68 0.703617
Target:  5'- -aGACcgaGUUCGCCGGGCcggcuccgcGGGCCa -3'
miRNA:   3'- ugCUGug-CGAGCGGCUCGaua------CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.