miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 5' -58.1 NC_001806.1 + 24973 0.72 0.505201
Target:  5'- gGCGGCGCGUUCGagggggaCGGgguGCUGUaacGGGCCg -3'
miRNA:   3'- -UGCUGUGCGAGCg------GCU---CGAUA---CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 97739 0.72 0.514764
Target:  5'- aGCaACACGCUCGCgGAGCUGUacgugcGGGa- -3'
miRNA:   3'- -UGcUGUGCGAGCGgCUCGAUA------CCCgg -5'
5571 5' -58.1 NC_001806.1 + 103821 0.72 0.514764
Target:  5'- gGCGACGgGCUCGCUGGGUccUAggcucaaugGGGaCCg -3'
miRNA:   3'- -UGCUGUgCGAGCGGCUCG--AUa--------CCC-GG- -5'
5571 5' -58.1 NC_001806.1 + 94727 0.71 0.5244
Target:  5'- gGCGGuaccugcccCACGC-CGCCGGGCUGUcGGacGCCg -3'
miRNA:   3'- -UGCU---------GUGCGaGCGGCUCGAUA-CC--CGG- -5'
5571 5' -58.1 NC_001806.1 + 21755 0.71 0.5244
Target:  5'- cGCGAgGCGCgggcCGUCGGGCg--GGGUCc -3'
miRNA:   3'- -UGCUgUGCGa---GCGGCUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 103155 0.71 0.534103
Target:  5'- aGCGGCA-GC-CGCUGuGCgcUGGGCCu -3'
miRNA:   3'- -UGCUGUgCGaGCGGCuCGauACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 2666 0.71 0.54387
Target:  5'- gGCGGCcgcggGCGC-CGCCGuGUggcUGGGCCc -3'
miRNA:   3'- -UGCUG-----UGCGaGCGGCuCGau-ACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 52528 0.71 0.573492
Target:  5'- uCGugGCGuCUCGCCGGacgacgugguccGCg--GGGCCu -3'
miRNA:   3'- uGCugUGC-GAGCGGCU------------CGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 25924 0.71 0.573492
Target:  5'- gGCGuGCGCGCgcgCGgCGGGCgugggggcgGGGCCg -3'
miRNA:   3'- -UGC-UGUGCGa--GCgGCUCGaua------CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 128280 0.7 0.579465
Target:  5'- cACGGCGCGa--GCCGGGCcgacgacgcgaugAUGGGUCg -3'
miRNA:   3'- -UGCUGUGCgagCGGCUCGa------------UACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 30893 0.7 0.583455
Target:  5'- -aGACGCGCcaCGCgGAGaCUuccgGGGCCg -3'
miRNA:   3'- ugCUGUGCGa-GCGgCUC-GAua--CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 24212 0.7 0.583455
Target:  5'- uGCGACugGCcCGCCGAc----GGGCCc -3'
miRNA:   3'- -UGCUGugCGaGCGGCUcgauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 32225 0.7 0.593451
Target:  5'- -aGGCACGCgcaccCGCgCG-GCcagGUGGGCCg -3'
miRNA:   3'- ugCUGUGCGa----GCG-GCuCGa--UACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 22381 0.7 0.593451
Target:  5'- aGCGugGCGCggGCCGuGCcccaccUGGGCUa -3'
miRNA:   3'- -UGCugUGCGagCGGCuCGau----ACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 77105 0.7 0.593451
Target:  5'- gGCGuccuGgGCGCcaagagCGCCGAGCgggccgGGGCCg -3'
miRNA:   3'- -UGC----UgUGCGa-----GCGGCUCGaua---CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 71945 0.7 0.603475
Target:  5'- -gGACGCGCgCGaCCGcgGGCccUGGGCCg -3'
miRNA:   3'- ugCUGUGCGaGC-GGC--UCGauACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 113847 0.7 0.607491
Target:  5'- uGCGGCGCGCggcccuggaccgccaUCgcgacuGCCGGGUUAgcgcgggGGGCCa -3'
miRNA:   3'- -UGCUGUGCG---------------AG------CGGCUCGAUa------CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 72122 0.7 0.613519
Target:  5'- cAC-ACACGUucuUCGCCG-GCccGUGGGCCc -3'
miRNA:   3'- -UGcUGUGCG---AGCGGCuCGa-UACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 75684 0.7 0.613519
Target:  5'- gGCGGCccaGCGCgccCGCaguagccaCGAGCgcUGGGCCg -3'
miRNA:   3'- -UGCUG---UGCGa--GCG--------GCUCGauACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 41105 0.7 0.623577
Target:  5'- cCGGaaccCACGgaCGCCGGGCc--GGGCCg -3'
miRNA:   3'- uGCU----GUGCgaGCGGCUCGauaCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.