miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 5' -58.1 NC_001806.1 + 24307 0.68 0.703617
Target:  5'- gGCGGCGCGggaccugCGCCGcacgguGCUGgccucGGGCCg -3'
miRNA:   3'- -UGCUGUGCga-----GCGGCu-----CGAUa----CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 24405 0.66 0.823697
Target:  5'- cCGACGCGC-CGCCGcuGCgccUGuGCCg -3'
miRNA:   3'- uGCUGUGCGaGCGGCu-CGau-ACcCGG- -5'
5571 5' -58.1 NC_001806.1 + 24857 0.69 0.683789
Target:  5'- aGCGGCACcguGCUgGCgGcGGCgg-GGGCCg -3'
miRNA:   3'- -UGCUGUG---CGAgCGgC-UCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 24973 0.72 0.505201
Target:  5'- gGCGGCGCGUUCGagggggaCGGgguGCUGUaacGGGCCg -3'
miRNA:   3'- -UGCUGUGCGAGCg------GCU---CGAUA---CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 25522 0.68 0.723211
Target:  5'- -gGACGCGC-CGgggaGGGCUG-GGGCCg -3'
miRNA:   3'- ugCUGUGCGaGCgg--CUCGAUaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 25924 0.71 0.573492
Target:  5'- gGCGuGCGCGCgcgCGgCGGGCgugggggcgGGGCCg -3'
miRNA:   3'- -UGC-UGUGCGa--GCgGCUCGaua------CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 26506 0.67 0.797859
Target:  5'- cGCGGC-CGCccCGCCGccgccccccGCcgGUGGGCCc -3'
miRNA:   3'- -UGCUGuGCGa-GCGGCu--------CGa-UACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 26820 0.68 0.732899
Target:  5'- uGCGACGCGCggGCgGGGagg-GGGCg -3'
miRNA:   3'- -UGCUGUGCGagCGgCUCgauaCCCGg -5'
5571 5' -58.1 NC_001806.1 + 26964 0.72 0.476993
Target:  5'- cCGcCugGCgCGCCGcGGCUcGUGGGCCc -3'
miRNA:   3'- uGCuGugCGaGCGGC-UCGA-UACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 27304 0.69 0.653759
Target:  5'- cCGGCcaaccaGCGUcCGCCGAGUcuUcgGGGCCc -3'
miRNA:   3'- uGCUG------UGCGaGCGGCUCG--AuaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 30403 0.69 0.681796
Target:  5'- gUGGCGCGCggcucggggggGCCGGGCguggaggGUGGGCa -3'
miRNA:   3'- uGCUGUGCGag---------CGGCUCGa------UACCCGg -5'
5571 5' -58.1 NC_001806.1 + 30893 0.7 0.583455
Target:  5'- -aGACGCGCcaCGCgGAGaCUuccgGGGCCg -3'
miRNA:   3'- ugCUGUGCGa-GCGgCUC-GAua--CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 32225 0.7 0.593451
Target:  5'- -aGGCACGCgcaccCGCgCG-GCcagGUGGGCCg -3'
miRNA:   3'- ugCUGUGCGa----GCG-GCuCGa--UACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 32928 0.73 0.449586
Target:  5'- aACcACACGCaugCGCCGGGCcguUGUgGGGCCc -3'
miRNA:   3'- -UGcUGUGCGa--GCGGCUCG---AUA-CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 33597 0.67 0.792528
Target:  5'- cACG-CGCGCccuuaauggaccggCGCgGGGCgggGGGCCg -3'
miRNA:   3'- -UGCuGUGCGa-------------GCGgCUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 34399 0.67 0.797859
Target:  5'- -gGGCgGCGgUgGCCGGGCc--GGGCCg -3'
miRNA:   3'- ugCUG-UGCgAgCGGCUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 35826 0.72 0.48071
Target:  5'- cGCGugGCGgccuccuagggucaaUUCGCgCGAGCUGUacaGGGCCc -3'
miRNA:   3'- -UGCugUGC---------------GAGCG-GCUCGAUA---CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 37170 0.66 0.815243
Target:  5'- uCGACGCGgUUGgCGAGCcu--GGCCa -3'
miRNA:   3'- uGCUGUGCgAGCgGCUCGauacCCGG- -5'
5571 5' -58.1 NC_001806.1 + 37906 0.74 0.397514
Target:  5'- cGCGcCACGcCUCGCCauggGGGCgccgGGGCCg -3'
miRNA:   3'- -UGCuGUGC-GAGCGG----CUCGaua-CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 40698 0.67 0.779896
Target:  5'- uACGGCaaGCGCagGCUGuGGCcGUGGGCg -3'
miRNA:   3'- -UGCUG--UGCGagCGGC-UCGaUACCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.