miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 5' -58.1 NC_001806.1 + 127752 0.68 0.713448
Target:  5'- -gGGCGgGCU-GCCGGGUgc-GGGCCu -3'
miRNA:   3'- ugCUGUgCGAgCGGCUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 127529 0.67 0.752013
Target:  5'- cUGuACACGgggucCUCGgCGGGCUcgGGGUCg -3'
miRNA:   3'- uGC-UGUGC-----GAGCgGCUCGAuaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 127024 1.11 0.001412
Target:  5'- gACGACACGCUCGCCGAGCUAUGGGCCu -3'
miRNA:   3'- -UGCUGUGCGAGCGGCUCGAUACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 125905 0.73 0.458627
Target:  5'- gGCGGcCACGCaaaaccagGCCGAcugccaGCUAUGGGCCc -3'
miRNA:   3'- -UGCU-GUGCGag------CGGCU------CGAUACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 121412 0.68 0.732899
Target:  5'- -gGGCGCGUgcugCGCCuuGGGCccggGGGCCu -3'
miRNA:   3'- ugCUGUGCGa---GCGG--CUCGaua-CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 119873 0.66 0.823697
Target:  5'- gGCGACGCGCcCGCCcuccgcuGCUGUccucggcgcuGGCCa -3'
miRNA:   3'- -UGCUGUGCGaGCGGcu-----CGAUAc---------CCGG- -5'
5571 5' -58.1 NC_001806.1 + 119032 0.69 0.683789
Target:  5'- gGCGGCGCuGCgccuugCGUgGGGCUcgGGGgCg -3'
miRNA:   3'- -UGCUGUG-CGa-----GCGgCUCGAuaCCCgG- -5'
5571 5' -58.1 NC_001806.1 + 116907 0.76 0.305725
Target:  5'- uACGAgGCGCUCGUCGccuGGCUGacccacgcGGGCCa -3'
miRNA:   3'- -UGCUgUGCGAGCGGC---UCGAUa-------CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 113847 0.7 0.607491
Target:  5'- uGCGGCGCGCggcccuggaccgccaUCgcgacuGCCGGGUUAgcgcgggGGGCCa -3'
miRNA:   3'- -UGCUGUGCG---------------AG------CGGCUCGAUa------CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 107262 0.7 0.623577
Target:  5'- uCGACGCcCUguaUGCCGAGUUucuaggGGGCCg -3'
miRNA:   3'- uGCUGUGcGA---GCGGCUCGAua----CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 107016 0.81 0.152137
Target:  5'- cGCG-CGCGCUUGCCGGGUUGgccgcccgcgGGGCCg -3'
miRNA:   3'- -UGCuGUGCGAGCGGCUCGAUa---------CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 106870 0.76 0.285473
Target:  5'- -gGACGCGggCGCCGAGCa--GGGCCc -3'
miRNA:   3'- ugCUGUGCgaGCGGCUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 105900 0.67 0.779896
Target:  5'- cGCGACACGaaCaCCGGGCgucUGUGGcuGCCa -3'
miRNA:   3'- -UGCUGUGCgaGcGGCUCG---AUACC--CGG- -5'
5571 5' -58.1 NC_001806.1 + 103821 0.72 0.514764
Target:  5'- gGCGACGgGCUCGCUGGGUccUAggcucaaugGGGaCCg -3'
miRNA:   3'- -UGCUGUgCGAGCGGCUCG--AUa--------CCC-GG- -5'
5571 5' -58.1 NC_001806.1 + 103155 0.71 0.534103
Target:  5'- aGCGGCA-GC-CGCUGuGCgcUGGGCCu -3'
miRNA:   3'- -UGCUGUgCGaGCGGCuCGauACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 97739 0.72 0.514764
Target:  5'- aGCaACACGCUCGCgGAGCUGUacgugcGGGa- -3'
miRNA:   3'- -UGcUGUGCGAGCGgCUCGAUA------CCCgg -5'
5571 5' -58.1 NC_001806.1 + 94727 0.71 0.5244
Target:  5'- gGCGGuaccugcccCACGC-CGCCGGGCUGUcGGacGCCg -3'
miRNA:   3'- -UGCU---------GUGCGaGCGGCUCGAUA-CC--CGG- -5'
5571 5' -58.1 NC_001806.1 + 94266 0.66 0.823697
Target:  5'- cGCGugGCGCgagGgCGAGCggcuccUGGGCa -3'
miRNA:   3'- -UGCugUGCGag-CgGCUCGau----ACCCGg -5'
5571 5' -58.1 NC_001806.1 + 93853 0.66 0.838486
Target:  5'- aACGcACGCGC-CGCCGAcucccgGCUugccggucggcGGGCCc -3'
miRNA:   3'- -UGC-UGUGCGaGCGGCU------CGAua---------CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 93566 0.7 0.633642
Target:  5'- gACGACaACGCgaCGCCGuucGGCggcccggGGGCCc -3'
miRNA:   3'- -UGCUG-UGCGa-GCGGC---UCGaua----CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.