miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 5' -58.1 NC_001806.1 + 152077 0.67 0.779896
Target:  5'- uGCGcGCGCGCgCGCCc-GCgggGGGCCc -3'
miRNA:   3'- -UGC-UGUGCGaGCGGcuCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 150854 0.68 0.703617
Target:  5'- -aGACcgaGUUCGCCGGGCcggcuccgcGGGCCa -3'
miRNA:   3'- ugCUGug-CGAGCGGCUCGaua------CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 150345 0.66 0.848021
Target:  5'- aGCGACcCGCggGCCaauGCgcgagGGGCCg -3'
miRNA:   3'- -UGCUGuGCGagCGGcu-CGaua--CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 147764 0.67 0.779896
Target:  5'- cCGACGCgGC-CGCgGAcGCgggGGGCCc -3'
miRNA:   3'- uGCUGUG-CGaGCGgCU-CGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 147714 0.66 0.831983
Target:  5'- -aGGCgGCGCUCGCac-GCacgGGGCCa -3'
miRNA:   3'- ugCUG-UGCGAGCGgcuCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 147645 0.74 0.397514
Target:  5'- cACGGCGCGCgucCGCgGGGCgg-GcGGCCg -3'
miRNA:   3'- -UGCUGUGCGa--GCGgCUCGauaC-CCGG- -5'
5571 5' -58.1 NC_001806.1 + 143389 0.68 0.723211
Target:  5'- gGCGACAaCGCUCcCCG-GCggccGGGUCg -3'
miRNA:   3'- -UGCUGU-GCGAGcGGCuCGaua-CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 141642 0.66 0.840093
Target:  5'- gGCGGCACGUUCGCgCGcacGCUaaacgcaaguccGUGcgccuGGCCg -3'
miRNA:   3'- -UGCUGUGCGAGCG-GCu--CGA------------UAC-----CCGG- -5'
5571 5' -58.1 NC_001806.1 + 139225 0.68 0.742503
Target:  5'- gGCGGCACGCgacggccaacgUgGCCGAGUUAcUGgaagaGGCCc -3'
miRNA:   3'- -UGCUGUGCG-----------AgCGGCUCGAU-AC-----CCGG- -5'
5571 5' -58.1 NC_001806.1 + 139113 0.69 0.683789
Target:  5'- cUGAC-CgGCUCGCCGcGCgggGGGCUg -3'
miRNA:   3'- uGCUGuG-CGAGCGGCuCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 134832 0.66 0.820335
Target:  5'- cGCGGCugGCggUCGCCGAcCUGgcgcaccucgcaGGCCa -3'
miRNA:   3'- -UGCUGugCG--AGCGGCUcGAUac----------CCGG- -5'
5571 5' -58.1 NC_001806.1 + 133447 0.78 0.225608
Target:  5'- cGCGACACGCUgCGaCGGGUccUGGGCCu -3'
miRNA:   3'- -UGCUGUGCGA-GCgGCUCGauACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 133248 0.69 0.643705
Target:  5'- gACGGC-CGUgggaGCCGuGCUuaGGGCCa -3'
miRNA:   3'- -UGCUGuGCGag--CGGCuCGAuaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 132975 0.68 0.732899
Target:  5'- -gGACGCGCUggugguggcCGCUcccucaGAGCccUGGGCCg -3'
miRNA:   3'- ugCUGUGCGA---------GCGG------CUCGauACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 132664 0.72 0.486311
Target:  5'- cGCGGC-CGCUuaCGCCGcGCUccuggGGGCCu -3'
miRNA:   3'- -UGCUGuGCGA--GCGGCuCGAua---CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 132148 0.75 0.36031
Target:  5'- gGCGGCGCGCgUUGCCGAgcaucccgacgcgcgGCUggcGUGGGCg -3'
miRNA:   3'- -UGCUGUGCG-AGCGGCU---------------CGA---UACCCGg -5'
5571 5' -58.1 NC_001806.1 + 130220 0.72 0.495716
Target:  5'- uGCGACACG-UCGCUGGGgCgg-GGGUCg -3'
miRNA:   3'- -UGCUGUGCgAGCGGCUC-GauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 129230 0.72 0.505201
Target:  5'- aGCGACGCgGUUCGCUGAGUca--GGCCu -3'
miRNA:   3'- -UGCUGUG-CGAGCGGCUCGauacCCGG- -5'
5571 5' -58.1 NC_001806.1 + 128435 0.66 0.848021
Target:  5'- -gGGC-CaGCUgGCUGAuGCgAUGGGCCa -3'
miRNA:   3'- ugCUGuG-CGAgCGGCU-CGaUACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 128280 0.7 0.579465
Target:  5'- cACGGCGCGa--GCCGGGCcgacgacgcgaugAUGGGUCg -3'
miRNA:   3'- -UGCUGUGCgagCGGCUCGa------------UACCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.