miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 5' -58.1 NC_001806.1 + 1634 0.67 0.752013
Target:  5'- aGCG-CGCGCaggCGgCGuGCgaGUGGGCCu -3'
miRNA:   3'- -UGCuGUGCGa--GCgGCuCGa-UACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 88678 0.67 0.752013
Target:  5'- cGCGGCcauGCGCUCGCaGAGaucucGUGGGgCg -3'
miRNA:   3'- -UGCUG---UGCGAGCGgCUCga---UACCCgG- -5'
5571 5' -58.1 NC_001806.1 + 73195 0.68 0.742503
Target:  5'- -aGACucgcCGCUCGcCCGAGCccccGGGCg -3'
miRNA:   3'- ugCUGu---GCGAGC-GGCUCGaua-CCCGg -5'
5571 5' -58.1 NC_001806.1 + 139225 0.68 0.742503
Target:  5'- gGCGGCACGCgacggccaacgUgGCCGAGUUAcUGgaagaGGCCc -3'
miRNA:   3'- -UGCUGUGCG-----------AgCGGCUCGAU-AC-----CCGG- -5'
5571 5' -58.1 NC_001806.1 + 42798 0.68 0.742503
Target:  5'- gGCGACGucgucCGCUCGCuCGAaGCgacagacgaacAUGGGUCg -3'
miRNA:   3'- -UGCUGU-----GCGAGCG-GCU-CGa----------UACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 79539 0.68 0.742503
Target:  5'- --aGCACGCg-GCCGGcGCccGUGGGCCc -3'
miRNA:   3'- ugcUGUGCGagCGGCU-CGa-UACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 50227 0.68 0.732899
Target:  5'- cGCGACuguCGCgUgGCCGcccGCUAUGccGGCCg -3'
miRNA:   3'- -UGCUGu--GCG-AgCGGCu--CGAUAC--CCGG- -5'
5571 5' -58.1 NC_001806.1 + 26820 0.68 0.732899
Target:  5'- uGCGACGCGCggGCgGGGagg-GGGCg -3'
miRNA:   3'- -UGCUGUGCGagCGgCUCgauaCCCGg -5'
5571 5' -58.1 NC_001806.1 + 121412 0.68 0.732899
Target:  5'- -gGGCGCGUgcugCGCCuuGGGCccggGGGCCu -3'
miRNA:   3'- ugCUGUGCGa---GCGG--CUCGaua-CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 132975 0.68 0.732899
Target:  5'- -gGACGCGCUggugguggcCGCUcccucaGAGCccUGGGCCg -3'
miRNA:   3'- ugCUGUGCGA---------GCGG------CUCGauACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 25522 0.68 0.723211
Target:  5'- -gGACGCGC-CGgggaGGGCUG-GGGCCg -3'
miRNA:   3'- ugCUGUGCGaGCgg--CUCGAUaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 143389 0.68 0.723211
Target:  5'- gGCGACAaCGCUCcCCG-GCggccGGGUCg -3'
miRNA:   3'- -UGCUGU-GCGAGcGGCuCGaua-CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 76574 0.68 0.713448
Target:  5'- gGCcGCGCGCgagCGCCGGGCccagcucGaGGCCg -3'
miRNA:   3'- -UGcUGUGCGa--GCGGCUCGaua----C-CCGG- -5'
5571 5' -58.1 NC_001806.1 + 127752 0.68 0.713448
Target:  5'- -gGGCGgGCU-GCCGGGUgc-GGGCCu -3'
miRNA:   3'- ugCUGUgCGAgCGGCUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 150854 0.68 0.703617
Target:  5'- -aGACcgaGUUCGCCGGGCcggcuccgcGGGCCa -3'
miRNA:   3'- ugCUGug-CGAGCGGCUCGaua------CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 51138 0.68 0.703617
Target:  5'- -aGGCGCGCga-CCGGGCUggGaGGCCc -3'
miRNA:   3'- ugCUGUGCGagcGGCUCGAuaC-CCGG- -5'
5571 5' -58.1 NC_001806.1 + 57028 0.68 0.703617
Target:  5'- gGC-ACugGgUgGCCGGGCccgGGGCCg -3'
miRNA:   3'- -UGcUGugCgAgCGGCUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 24307 0.68 0.703617
Target:  5'- gGCGGCGCGggaccugCGCCGcacgguGCUGgccucGGGCCg -3'
miRNA:   3'- -UGCUGUGCga-----GCGGCu-----CGAUa----CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 41606 0.68 0.703617
Target:  5'- aGCGcCGCGaUCGCCGGGggugugGGGCCc -3'
miRNA:   3'- -UGCuGUGCgAGCGGCUCgaua--CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 44118 0.68 0.703617
Target:  5'- cCGGuccCGCGCUCGCuCGGGg---GGGCCu -3'
miRNA:   3'- uGCU---GUGCGAGCG-GCUCgauaCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.