miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5574 5' -53.6 NC_001806.1 + 95956 0.66 0.964417
Target:  5'- gGCGGGGggcUCGGGUGCUgauuGGGCCGucaGCg -3'
miRNA:   3'- -UGCUCC---AGUUUACGG----CCCGGUucaUG- -5'
5574 5' -53.6 NC_001806.1 + 94181 0.66 0.964417
Target:  5'- gGCGucGUCugagGCCGGGCCuGGa-- -3'
miRNA:   3'- -UGCucCAGuuuaCGGCCCGGuUCaug -5'
5574 5' -53.6 NC_001806.1 + 135850 0.66 0.964078
Target:  5'- -gGAGGguaccgUCGAcgGCCGGGgcgucuaUCAGGUGCc -3'
miRNA:   3'- ugCUCC------AGUUuaCGGCCC-------GGUUCAUG- -5'
5574 5' -53.6 NC_001806.1 + 134317 0.66 0.960919
Target:  5'- gGCG-GGUuguuggccagCAGGUaCCGGGCCAuGUACc -3'
miRNA:   3'- -UGCuCCA----------GUUUAcGGCCCGGUuCAUG- -5'
5574 5' -53.6 NC_001806.1 + 76908 0.66 0.960919
Target:  5'- -gGAGGUCucucGAGgagGCCGaGGCgGAGUGg -3'
miRNA:   3'- ugCUCCAG----UUUa--CGGC-CCGgUUCAUg -5'
5574 5' -53.6 NC_001806.1 + 1765 0.66 0.95719
Target:  5'- cGCGGGGaCAugggcaccggcGUGuCCGGGCCGAagcgcGUGCg -3'
miRNA:   3'- -UGCUCCaGUu----------UAC-GGCCCGGUU-----CAUG- -5'
5574 5' -53.6 NC_001806.1 + 145626 0.66 0.95484
Target:  5'- aGCGAGGauacggaggaguggCGGGUGCCGGGggaCCGGGg-- -3'
miRNA:   3'- -UGCUCCa-------------GUUUACGGCCC---GGUUCaug -5'
5574 5' -53.6 NC_001806.1 + 76543 0.66 0.94902
Target:  5'- aGCG-GGUCAcg-GCgGGGCUgcgggAGGUGCu -3'
miRNA:   3'- -UGCuCCAGUuuaCGgCCCGG-----UUCAUG- -5'
5574 5' -53.6 NC_001806.1 + 4609 0.66 0.944571
Target:  5'- gACGAGGUCGAugacGCCGauGGCCGc---- -3'
miRNA:   3'- -UGCUCCAGUUua--CGGC--CCGGUucaug -5'
5574 5' -53.6 NC_001806.1 + 51787 0.67 0.939876
Target:  5'- aGCGGGGcC--GUGgC-GGCCAAGUACg -3'
miRNA:   3'- -UGCUCCaGuuUACgGcCCGGUUCAUG- -5'
5574 5' -53.6 NC_001806.1 + 117366 0.67 0.939876
Target:  5'- -gGAGGUCcg--GCCuGGGCCGcgaGGUAg -3'
miRNA:   3'- ugCUCCAGuuuaCGG-CCCGGU---UCAUg -5'
5574 5' -53.6 NC_001806.1 + 4186 0.67 0.938907
Target:  5'- gGCGGGGgcccggcGCCGGGCCAcg-GCu -3'
miRNA:   3'- -UGCUCCaguuua-CGGCCCGGUucaUG- -5'
5574 5' -53.6 NC_001806.1 + 34521 0.67 0.934932
Target:  5'- -gGGGGUgGGAgcgcggGCCGGGCCGcucGUAa -3'
miRNA:   3'- ugCUCCAgUUUa-----CGGCCCGGUu--CAUg -5'
5574 5' -53.6 NC_001806.1 + 30526 0.67 0.929737
Target:  5'- cCGAGGaaGAGgcgcggGUCGGGCCAGGa-- -3'
miRNA:   3'- uGCUCCagUUUa-----CGGCCCGGUUCaug -5'
5574 5' -53.6 NC_001806.1 + 41833 0.67 0.929737
Target:  5'- gGCGGGcGUCAGGgccCCGGGCgCGuacGUGCg -3'
miRNA:   3'- -UGCUC-CAGUUUac-GGCCCG-GUu--CAUG- -5'
5574 5' -53.6 NC_001806.1 + 2919 0.67 0.9265
Target:  5'- -gGGGGUCGcgggccgccgccuccGGgcgGCCGGGCCGGGc-- -3'
miRNA:   3'- ugCUCCAGU---------------UUa--CGGCCCGGUUCaug -5'
5574 5' -53.6 NC_001806.1 + 59609 0.67 0.9265
Target:  5'- ---uGGUCAAGcGCCGgggccuuggggccccGGCCGGGUACu -3'
miRNA:   3'- ugcuCCAGUUUaCGGC---------------CCGGUUCAUG- -5'
5574 5' -53.6 NC_001806.1 + 11878 0.68 0.912648
Target:  5'- cCGGGGcCAGAcGCgGGGCCGAagACg -3'
miRNA:   3'- uGCUCCaGUUUaCGgCCCGGUUcaUG- -5'
5574 5' -53.6 NC_001806.1 + 67219 0.68 0.912648
Target:  5'- gGCGGGG-CGcgcUGgUGGGCCAGGUGa -3'
miRNA:   3'- -UGCUCCaGUuu-ACgGCCCGGUUCAUg -5'
5574 5' -53.6 NC_001806.1 + 59812 0.68 0.912648
Target:  5'- cGCGGGGUCAAuuguauggaGCCGGuuguguuuggaGCCAAGgcCa -3'
miRNA:   3'- -UGCUCCAGUUua-------CGGCC-----------CGGUUCauG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.