Results 1 - 20 of 94 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 118447 | 0.66 | 0.810741 |
Target: 5'- aUCCggGCGAAUaaAGuUGGCCUCGUCGAc -3' miRNA: 3'- aAGG--UGCUUGggUC-GCUGGAGCGGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 112255 | 0.72 | 0.435271 |
Target: 5'- -aCCAgGGugGCCCgGGCGACCcuggUCGCCGAg -3' miRNA: 3'- aaGGUgCU--UGGG-UCGCUGG----AGCGGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 131460 | 0.72 | 0.462268 |
Target: 5'- gUCCGCGGA-CCGGCGGCgCUguUGCCGGa -3' miRNA: 3'- aAGGUGCUUgGGUCGCUG-GA--GCGGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 123240 | 0.71 | 0.499578 |
Target: 5'- -cCCACGcGGCCCuGCGccgacGCCUgGCCGAg -3' miRNA: 3'- aaGGUGC-UUGGGuCGC-----UGGAgCGGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 107627 | 0.71 | 0.508158 |
Target: 5'- gUCCugGcccagcaGACCCA-CGGCCUCGCCu- -3' miRNA: 3'- aAGGugC-------UUGGGUcGCUGGAGCGGcu -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 24845 | 0.71 | 0.518729 |
Target: 5'- -gCCACGGGCCgCAGCGGCaccgUGCUGGc -3' miRNA: 3'- aaGGUGCUUGG-GUCGCUGga--GCGGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 20655 | 0.71 | 0.518729 |
Target: 5'- -gCCACGGGCCCccGGCGugCcggCGUCGGg -3' miRNA: 3'- aaGGUGCUUGGG--UCGCugGa--GCGGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 4339 | 0.71 | 0.518729 |
Target: 5'- --gCGCGGGCCCGGCGGCgCUCGaugCGGc -3' miRNA: 3'- aagGUGCUUGGGUCGCUG-GAGCg--GCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 86653 | 0.71 | 0.518729 |
Target: 5'- -cCCACGGccgucaGCCCGGCGGCCgugagGCCGc -3' miRNA: 3'- aaGGUGCU------UGGGUCGCUGGag---CGGCu -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 107437 | 0.72 | 0.435271 |
Target: 5'- gUCCgACGucGCCgCAGCGACCaaCGCCGAc -3' miRNA: 3'- aAGG-UGCu-UGG-GUCGCUGGa-GCGGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 68196 | 0.72 | 0.426476 |
Target: 5'- aUUgGCGAGCCUAGcCGGCCuUCGCCa- -3' miRNA: 3'- aAGgUGCUUGGGUC-GCUGG-AGCGGcu -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 5248 | 0.73 | 0.417788 |
Target: 5'- -cCCACGGACCCcGaCGACCccCGCCGu -3' miRNA: 3'- aaGGUGCUUGGGuC-GCUGGa-GCGGCu -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 4918 | 0.75 | 0.287804 |
Target: 5'- -aCgGCGucCCCGGCGuCCUCGCCGGc -3' miRNA: 3'- aaGgUGCuuGGGUCGCuGGAGCGGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 21404 | 0.75 | 0.287804 |
Target: 5'- aUCC-CGAcgcccgACCCcGCGGCCUCGCCGc -3' miRNA: 3'- aAGGuGCU------UGGGuCGCUGGAGCGGCu -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 76307 | 0.75 | 0.294491 |
Target: 5'- aUCCGCGGugcgcaacgACCCGGCGGCggcCGCCGAg -3' miRNA: 3'- aAGGUGCU---------UGGGUCGCUGga-GCGGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 44292 | 0.75 | 0.315277 |
Target: 5'- -aCCAgGAGCUgGGCGACCUuggCGCCGGc -3' miRNA: 3'- aaGGUgCUUGGgUCGCUGGA---GCGGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 132727 | 0.75 | 0.315277 |
Target: 5'- -cCCGCGAgcugGCCCGGCGugGCCUCGgCGGc -3' miRNA: 3'- aaGGUGCU----UGGGUCGC--UGGAGCgGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 35558 | 0.74 | 0.352339 |
Target: 5'- cUCgGCGcGCCCGGCG-CCgCGCCGAa -3' miRNA: 3'- aAGgUGCuUGGGUCGCuGGaGCGGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 44448 | 0.74 | 0.360112 |
Target: 5'- -gCCGCGGGCCCGGCGuCCgCGUgGAg -3' miRNA: 3'- aaGGUGCUUGGGUCGCuGGaGCGgCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 3177 | 0.73 | 0.400739 |
Target: 5'- --gCACGGcgGCCaCGGCGGCCUCGCUGc -3' miRNA: 3'- aagGUGCU--UGG-GUCGCUGGAGCGGCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home