miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5576 3' -61.1 NC_001806.1 + 149435 0.66 0.735868
Target:  5'- gGCGAcCCCGGGCcCUGcgUCUGAgUCa -3'
miRNA:   3'- gCGCU-GGGCCUGcGGCuaGGGCUgAG- -5'
5576 3' -61.1 NC_001806.1 + 26976 0.66 0.70757
Target:  5'- cCGCGGCUCguGGGCccgcgagcggGCCGA-CCgGGCUCg -3'
miRNA:   3'- -GCGCUGGG--CCUG----------CGGCUaGGgCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 126651 0.66 0.713278
Target:  5'- -cCGACCuCGGACGCCacaccaucuccCCCGugUCc -3'
miRNA:   3'- gcGCUGG-GCCUGCGGcua--------GGGCugAG- -5'
5576 3' -61.1 NC_001806.1 + 81279 0.66 0.698011
Target:  5'- aCGgGGuCCCGGGCGUCGAagguUCUCGAa-- -3'
miRNA:   3'- -GCgCU-GGGCCUGCGGCU----AGGGCUgag -5'
5576 3' -61.1 NC_001806.1 + 33380 0.66 0.735868
Target:  5'- cCGCGgcACCCGGACGCg---CCCGGa-- -3'
miRNA:   3'- -GCGC--UGGGCCUGCGgcuaGGGCUgag -5'
5576 3' -61.1 NC_001806.1 + 62743 0.66 0.726506
Target:  5'- aGCGugUUGGGgcgcagcgucuCGCCG-UCCCGGgUCa -3'
miRNA:   3'- gCGCugGGCCU-----------GCGGCuAGGGCUgAG- -5'
5576 3' -61.1 NC_001806.1 + 76576 0.66 0.726506
Target:  5'- cCGCG-CgCGaGCGCCGggCCCaGCUCg -3'
miRNA:   3'- -GCGCuGgGCcUGCGGCuaGGGcUGAG- -5'
5576 3' -61.1 NC_001806.1 + 144561 0.66 0.744223
Target:  5'- uGCGAaagacuuUCCGGGCGCgucCGGgugCCgCGGCUCu -3'
miRNA:   3'- gCGCU-------GGGCCUGCG---GCUa--GG-GCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 21321 0.66 0.735868
Target:  5'- aCGcCGGCgaGGACGCCGGggaCgCCGuCUCg -3'
miRNA:   3'- -GC-GCUGggCCUGCGGCUa--G-GGCuGAG- -5'
5576 3' -61.1 NC_001806.1 + 123119 0.66 0.726506
Target:  5'- uCGCGcacACCgGGugGCgGGUCgCGGCg- -3'
miRNA:   3'- -GCGC---UGGgCCugCGgCUAGgGCUGag -5'
5576 3' -61.1 NC_001806.1 + 21981 0.66 0.717071
Target:  5'- gGuCGAgCUGGACGCCGA-CgCGAcCUCc -3'
miRNA:   3'- gC-GCUgGGCCUGCGGCUaGgGCU-GAG- -5'
5576 3' -61.1 NC_001806.1 + 6082 0.66 0.726506
Target:  5'- gGCgGGCCCGGGCGgCGGggggcgggucUCuCCGGCg- -3'
miRNA:   3'- gCG-CUGGGCCUGCgGCU----------AG-GGCUGag -5'
5576 3' -61.1 NC_001806.1 + 24632 0.66 0.717071
Target:  5'- uGgGGCCUGGgcGCGCCGcugcggCCCGugUa -3'
miRNA:   3'- gCgCUGGGCC--UGCGGCua----GGGCugAg -5'
5576 3' -61.1 NC_001806.1 + 24461 0.66 0.717071
Target:  5'- aCGCGcuucgGCCCGGAcaCGCCGGUgCCCa---- -3'
miRNA:   3'- -GCGC-----UGGGCCU--GCGGCUA-GGGcugag -5'
5576 3' -61.1 NC_001806.1 + 24676 0.66 0.717071
Target:  5'- gCGCGAggCGGugcGCGCCGG-CCCGGCcCg -3'
miRNA:   3'- -GCGCUggGCC---UGCGGCUaGGGCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 97368 0.66 0.735868
Target:  5'- --aGGCCCGGgccacgGCGCCGAccaCCCGgaaccuGCUCa -3'
miRNA:   3'- gcgCUGGGCC------UGCGGCUa--GGGC------UGAG- -5'
5576 3' -61.1 NC_001806.1 + 105438 0.66 0.70757
Target:  5'- uGCGACCUGGcGCGCaCGuuugCCCGGg-- -3'
miRNA:   3'- gCGCUGGGCC-UGCG-GCua--GGGCUgag -5'
5576 3' -61.1 NC_001806.1 + 24792 0.66 0.726506
Target:  5'- aCGaCGGCCCGGGggcccugcCGCCGGcgccgCCCGGgaUUCg -3'
miRNA:   3'- -GC-GCUGGGCCU--------GCGGCUa----GGGCU--GAG- -5'
5576 3' -61.1 NC_001806.1 + 63753 0.66 0.745147
Target:  5'- -aCGGCCCGcACGUCGGUgugCCaCGGCUCc -3'
miRNA:   3'- gcGCUGGGCcUGCGGCUA---GG-GCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 57378 0.66 0.726506
Target:  5'- -aCGGCCCGGugGCUGucguugcggagcAUCCCGcgcCUUg -3'
miRNA:   3'- gcGCUGGGCCugCGGC------------UAGGGCu--GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.