miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5576 3' -61.1 NC_001806.1 + 63753 0.66 0.745147
Target:  5'- -aCGGCCCGcACGUCGGUgugCCaCGGCUCc -3'
miRNA:   3'- gcGCUGGGCcUGCGGCUA---GG-GCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 22766 0.74 0.297917
Target:  5'- aCGaCGACgCCGGGCGCCGcgCCCaGGC-Cg -3'
miRNA:   3'- -GC-GCUG-GGCCUGCGGCuaGGG-CUGaG- -5'
5576 3' -61.1 NC_001806.1 + 58068 0.74 0.304557
Target:  5'- --aGGCCCGGGagGCCGAgcUCCCGGCUg -3'
miRNA:   3'- gcgCUGGGCCUg-CGGCU--AGGGCUGAg -5'
5576 3' -61.1 NC_001806.1 + 123774 0.74 0.311309
Target:  5'- aGCGGCCCcucucuccaGGACGCCGccgucUCCCG-CUCc -3'
miRNA:   3'- gCGCUGGG---------CCUGCGGCu----AGGGCuGAG- -5'
5576 3' -61.1 NC_001806.1 + 89552 0.73 0.338725
Target:  5'- gGCGGCCCGGuuuauucGCGUCGG-CCCGGC-Cg -3'
miRNA:   3'- gCGCUGGGCC-------UGCGGCUaGGGCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 31091 0.72 0.385026
Target:  5'- gGCGACCCGGcugcGgGCCGcgGUCcCCGGCUg -3'
miRNA:   3'- gCGCUGGGCC----UgCGGC--UAG-GGCUGAg -5'
5576 3' -61.1 NC_001806.1 + 100392 0.72 0.385026
Target:  5'- gGCGGCgCGGGgGCCGGggugCCCGAUg- -3'
miRNA:   3'- gCGCUGgGCCUgCGGCUa---GGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 113853 0.72 0.393006
Target:  5'- gCGCGGCCCuGGAcCGCC-AUCgCGACUg -3'
miRNA:   3'- -GCGCUGGG-CCU-GCGGcUAGgGCUGAg -5'
5576 3' -61.1 NC_001806.1 + 31771 0.72 0.409283
Target:  5'- cCGCGGCCCGGGCuGCCugaccaccGAUcCCCGAaagCa -3'
miRNA:   3'- -GCGCUGGGCCUG-CGG--------CUA-GGGCUga-G- -5'
5576 3' -61.1 NC_001806.1 + 147767 0.74 0.284976
Target:  5'- aCGCGGCCgCGGACGCgGGgggCCCGGggCg -3'
miRNA:   3'- -GCGCUGG-GCCUGCGgCUa--GGGCUgaG- -5'
5576 3' -61.1 NC_001806.1 + 23855 0.74 0.284976
Target:  5'- gGCGGCCUGGauGCGCCaGAUCcCCGACc- -3'
miRNA:   3'- gCGCUGGGCC--UGCGG-CUAG-GGCUGag -5'
5576 3' -61.1 NC_001806.1 + 5776 0.75 0.254574
Target:  5'- gCGgGGCCCGGGCcCCGAcuUCCCGGUUCg -3'
miRNA:   3'- -GCgCUGGGCCUGcGGCU--AGGGCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 23361 0.79 0.147585
Target:  5'- aGCGGCgCGGACGCC---CCCGGCUCg -3'
miRNA:   3'- gCGCUGgGCCUGCGGcuaGGGCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 4189 0.77 0.19707
Target:  5'- gGgGGCCCGG-CGCCGggCCaCGGCUCc -3'
miRNA:   3'- gCgCUGGGCCuGCGGCuaGG-GCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 2509 0.77 0.206608
Target:  5'- aCGCGGCCUGGGCGgCGGgggcgggCCCGGCg- -3'
miRNA:   3'- -GCGCUGGGCCUGCgGCUa------GGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 117947 0.76 0.211526
Target:  5'- uCGCGguaccGCCCGacgacagcGACGCCGGUCCCGgagGCUCg -3'
miRNA:   3'- -GCGC-----UGGGC--------CUGCGGCUAGGGC---UGAG- -5'
5576 3' -61.1 NC_001806.1 + 78783 0.76 0.216544
Target:  5'- uCGCGGgCCGGACGCCGccuugcgcgAUgCCGugUCg -3'
miRNA:   3'- -GCGCUgGGCCUGCGGC---------UAgGGCugAG- -5'
5576 3' -61.1 NC_001806.1 + 129664 0.76 0.232211
Target:  5'- uGCGcccGCCCGGGcCGCCGAgcggCCCGuCUCc -3'
miRNA:   3'- gCGC---UGGGCCU-GCGGCUa---GGGCuGAG- -5'
5576 3' -61.1 NC_001806.1 + 3468 0.75 0.248822
Target:  5'- gGcCGGCCUGGGCGCgGcgCCCGGCgUCg -3'
miRNA:   3'- gC-GCUGGGCCUGCGgCuaGGGCUG-AG- -5'
5576 3' -61.1 NC_001806.1 + 143980 0.75 0.248822
Target:  5'- gGCGAccCCCGGccCGCaCGAUCCCGACa- -3'
miRNA:   3'- gCGCU--GGGCCu-GCG-GCUAGGGCUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.