miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5576 3' -61.1 NC_001806.1 + 338 0.68 0.591193
Target:  5'- aCGCcGCCCGGAcCGCCG--CCCGcCUUu -3'
miRNA:   3'- -GCGcUGGGCCU-GCGGCuaGGGCuGAG- -5'
5576 3' -61.1 NC_001806.1 + 1409 0.68 0.591193
Target:  5'- uGCGGCCC-GugGCCGAggcccagcgaaUCCCGGg-- -3'
miRNA:   3'- gCGCUGGGcCugCGGCU-----------AGGGCUgag -5'
5576 3' -61.1 NC_001806.1 + 1718 0.67 0.638896
Target:  5'- cCGCcGCCCGGccguccaGCGCCGGcagcacggCCCGGCg- -3'
miRNA:   3'- -GCGcUGGGCC-------UGCGGCUa-------GGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 1915 0.68 0.63402
Target:  5'- aCGCGGCCCGaggccagcaccgugcGGCGCaGGUCCCG-Cg- -3'
miRNA:   3'- -GCGCUGGGC---------------CUGCGgCUAGGGCuGag -5'
5576 3' -61.1 NC_001806.1 + 2509 0.77 0.206608
Target:  5'- aCGCGGCCUGGGCGgCGGgggcgggCCCGGCg- -3'
miRNA:   3'- -GCGCUGGGCCUGCgGCUa------GGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 2666 0.7 0.496521
Target:  5'- gGCGGCCgCGGGCGCCG---CCGugUg -3'
miRNA:   3'- gCGCUGG-GCCUGCGGCuagGGCugAg -5'
5576 3' -61.1 NC_001806.1 + 2789 0.7 0.496521
Target:  5'- gGCGGCCCgGGGCGCCGcgggCUgGGCg- -3'
miRNA:   3'- gCGCUGGG-CCUGCGGCua--GGgCUGag -5'
5576 3' -61.1 NC_001806.1 + 3100 0.67 0.688402
Target:  5'- gGCGGCCgCGGagcucggcagGCGCgGGUCCCGcgGCa- -3'
miRNA:   3'- gCGCUGG-GCC----------UGCGgCUAGGGC--UGag -5'
5576 3' -61.1 NC_001806.1 + 3468 0.75 0.248822
Target:  5'- gGcCGGCCUGGGCGCgGcgCCCGGCgUCg -3'
miRNA:   3'- gC-GCUGGGCCUGCGgCuaGGGCUG-AG- -5'
5576 3' -61.1 NC_001806.1 + 3580 0.7 0.514985
Target:  5'- gGCGAggaucCCCGcGGCGCCGuaCCCGGCg- -3'
miRNA:   3'- gCGCU-----GGGC-CUGCGGCuaGGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 4189 0.77 0.19707
Target:  5'- gGgGGCCCGG-CGCCGggCCaCGGCUCc -3'
miRNA:   3'- gCgCUGGGCCuGCGGCuaGG-GCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 4307 0.68 0.600899
Target:  5'- aGCGGCCCGuGGCGUCGcggCCGGC-Ca -3'
miRNA:   3'- gCGCUGGGC-CUGCGGCuagGGCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 4447 0.69 0.552696
Target:  5'- gGCGuccGCCCGGgggcugccgGCGCCGcgCUCGACg- -3'
miRNA:   3'- gCGC---UGGGCC---------UGCGGCuaGGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 4735 0.7 0.477461
Target:  5'- uCGCGGCCCcgggccgGGGC-CCGGUCgCCGGCg- -3'
miRNA:   3'- -GCGCUGGG-------CCUGcGGCUAG-GGCUGag -5'
5576 3' -61.1 NC_001806.1 + 5776 0.75 0.254574
Target:  5'- gCGgGGCCCGGGCcCCGAcuUCCCGGUUCg -3'
miRNA:   3'- -GCgCUGGGCCUGcGGCU--AGGGCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 6040 0.7 0.514985
Target:  5'- uGCGAgcaCUGG-CGCCGugCCCGACUCc -3'
miRNA:   3'- gCGCUg--GGCCuGCGGCuaGGGCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 6082 0.66 0.726506
Target:  5'- gGCgGGCCCGGGCGgCGGggggcgggucUCuCCGGCg- -3'
miRNA:   3'- gCG-CUGGGCCUGCgGCU----------AG-GGCUGag -5'
5576 3' -61.1 NC_001806.1 + 20353 0.7 0.496521
Target:  5'- gGCGGCCCuuGGGcCGCCcgccgucccguuGGUCCCGGCg- -3'
miRNA:   3'- gCGCUGGG--CCU-GCGG------------CUAGGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 20473 0.67 0.688402
Target:  5'- uCGgGGCCCGGGCcCCGcccccugCCCGuucCUCg -3'
miRNA:   3'- -GCgCUGGGCCUGcGGCua-----GGGCu--GAG- -5'
5576 3' -61.1 NC_001806.1 + 20888 0.69 0.56226
Target:  5'- cCGCG-CCgGGACGCCGAUacgCgGACg- -3'
miRNA:   3'- -GCGCuGGgCCUGCGGCUAg--GgCUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.