miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5578 3' -56.9 NC_001806.1 + 51024 0.66 0.908178
Target:  5'- -aGcGGCGggUCCGUGuuggGCCCGcGggUCCg -3'
miRNA:   3'- gaC-CCGCauGGGCAC----UGGGC-CaaAGG- -5'
5578 3' -56.9 NC_001806.1 + 31053 0.66 0.908178
Target:  5'- -gGGGCGUACgUG-GuCCUGGUggaCCa -3'
miRNA:   3'- gaCCCGCAUGgGCaCuGGGCCAaa-GG- -5'
5578 3' -56.9 NC_001806.1 + 116548 0.66 0.902083
Target:  5'- gUGGcGCG-GCUCGUGGCCagGGgcaUCCg -3'
miRNA:   3'- gACC-CGCaUGGGCACUGGg-CCaa-AGG- -5'
5578 3' -56.9 NC_001806.1 + 5598 0.66 0.902083
Target:  5'- -cGGGg--GCCCGUGGCCgCGGc--CCg -3'
miRNA:   3'- gaCCCgcaUGGGCACUGG-GCCaaaGG- -5'
5578 3' -56.9 NC_001806.1 + 49633 0.66 0.902083
Target:  5'- uCUGGagggacGCGUGCCg--GGCCCGGagcUCCg -3'
miRNA:   3'- -GACC------CGCAUGGgcaCUGGGCCaa-AGG- -5'
5578 3' -56.9 NC_001806.1 + 41394 0.66 0.902083
Target:  5'- cCUGGGCGcggaugcgAUCCGUGAgCCGccugCCc -3'
miRNA:   3'- -GACCCGCa-------UGGGCACUgGGCcaaaGG- -5'
5578 3' -56.9 NC_001806.1 + 91201 0.66 0.899582
Target:  5'- -gGGGCGUACCUGgcgcgcgccgcggGACUCGuGggggCCa -3'
miRNA:   3'- gaCCCGCAUGGGCa------------CUGGGC-Caaa-GG- -5'
5578 3' -56.9 NC_001806.1 + 110330 0.66 0.895764
Target:  5'- -cGGGCGUGuuCCCGacacGGCCUacugGGuUUUCCg -3'
miRNA:   3'- gaCCCGCAU--GGGCa---CUGGG----CC-AAAGG- -5'
5578 3' -56.9 NC_001806.1 + 77509 0.66 0.894473
Target:  5'- -cGaGGCGUACCUGcgagugagcggaGGCCCGGgg-CCc -3'
miRNA:   3'- gaC-CCGCAUGGGCa-----------CUGGGCCaaaGG- -5'
5578 3' -56.9 NC_001806.1 + 4736 0.66 0.889223
Target:  5'- ---cGCGgcCCCGggccggGGCCCGGUcgCCg -3'
miRNA:   3'- gaccCGCauGGGCa-----CUGGGCCAaaGG- -5'
5578 3' -56.9 NC_001806.1 + 17802 0.66 0.889223
Target:  5'- gUGGGcCGUGCC---GACUCGGUUUUUg -3'
miRNA:   3'- gACCC-GCAUGGgcaCUGGGCCAAAGG- -5'
5578 3' -56.9 NC_001806.1 + 22047 0.66 0.882465
Target:  5'- -cGGG-G-AgCCGUGGCCCGGcg-CCg -3'
miRNA:   3'- gaCCCgCaUgGGCACUGGGCCaaaGG- -5'
5578 3' -56.9 NC_001806.1 + 20361 0.66 0.882465
Target:  5'- uUGGGCc-GCCCGccgucccguUGGuCCCGGcgUCCg -3'
miRNA:   3'- gACCCGcaUGGGC---------ACU-GGGCCaaAGG- -5'
5578 3' -56.9 NC_001806.1 + 18974 0.66 0.882465
Target:  5'- -cGGGCG-ACCCGcagGACCCGa----- -3'
miRNA:   3'- gaCCCGCaUGGGCa--CUGGGCcaaagg -5'
5578 3' -56.9 NC_001806.1 + 111849 0.66 0.875493
Target:  5'- -gGuGGCGUGCgUGUGuACCaaGUUUCCg -3'
miRNA:   3'- gaC-CCGCAUGgGCAC-UGGgcCAAAGG- -5'
5578 3' -56.9 NC_001806.1 + 117989 0.66 0.875493
Target:  5'- -cGGGUGuUGgCCGUGAaCgCGGgaUCCa -3'
miRNA:   3'- gaCCCGC-AUgGGCACU-GgGCCaaAGG- -5'
5578 3' -56.9 NC_001806.1 + 131498 0.66 0.875493
Target:  5'- -gGGGCcaaguugGCCCccgGACCCGGg--CCg -3'
miRNA:   3'- gaCCCGca-----UGGGca-CUGGGCCaaaGG- -5'
5578 3' -56.9 NC_001806.1 + 13016 0.67 0.860927
Target:  5'- -gGGGCcuuggGCCCGUGccACCCGGcgaUCUu -3'
miRNA:   3'- gaCCCGca---UGGGCAC--UGGGCCaa-AGG- -5'
5578 3' -56.9 NC_001806.1 + 19112 0.67 0.853343
Target:  5'- -gGGGUGgggGCCCG-GGgCUGcGUUUCCc -3'
miRNA:   3'- gaCCCGCa--UGGGCaCUgGGC-CAAAGG- -5'
5578 3' -56.9 NC_001806.1 + 78687 0.67 0.853343
Target:  5'- cCUGGGCGcGCCCGUcGuCgUGGcgcUCCg -3'
miRNA:   3'- -GACCCGCaUGGGCA-CuGgGCCaa-AGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.