miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5581 5' -64.1 NC_001806.1 + 9659 0.65 0.60789
Target:  5'- gCCCGCCaggcACGCCUgCG-CCaacaggucauacaCGCCCACa -3'
miRNA:   3'- -GGGCGGc---UGCGGA-GCaGGc------------GCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 68157 0.66 0.554788
Target:  5'- aCCCGCCGGucCGcCCUCGgacggaCCuaugcaGCGCCUAUu -3'
miRNA:   3'- -GGGCGGCU--GC-GGAGCa-----GG------CGCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 143545 0.66 0.573633
Target:  5'- gCCCGgcCCGGCccgGCC-CGgccaCCGcCGCCCACc -3'
miRNA:   3'- -GGGC--GGCUG---CGGaGCa---GGC-GCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 33133 0.66 0.583113
Target:  5'- aCCGCCGcggucggggGCcCCUCGUCCcGgGCCgUACg -3'
miRNA:   3'- gGGCGGC---------UGcGGAGCAGG-CgCGG-GUG- -5'
5581 5' -64.1 NC_001806.1 + 67844 0.66 0.573633
Target:  5'- gCCGCCc-CGCagaaaGUCCGCaCCCACg -3'
miRNA:   3'- gGGCGGcuGCGgag--CAGGCGcGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 47493 0.66 0.56419
Target:  5'- gUCC-CCGaACGCacccaaaUCGacaUUCGCGCCCACg -3'
miRNA:   3'- -GGGcGGC-UGCGg------AGC---AGGCGCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 21822 0.66 0.573633
Target:  5'- cCCCGCCcGgGCCacccccccucUCcgaggCCGCGCCCAa -3'
miRNA:   3'- -GGGCGGcUgCGG----------AGca---GGCGCGGGUg -5'
5581 5' -64.1 NC_001806.1 + 96473 0.66 0.56419
Target:  5'- cCCCGgC-ACGCCUgGggUCGCGgCCGCg -3'
miRNA:   3'- -GGGCgGcUGCGGAgCa-GGCGCgGGUG- -5'
5581 5' -64.1 NC_001806.1 + 107399 0.66 0.571742
Target:  5'- gCCCGCCGGagccuucugauaGCCUCGgcccuguguacgUCCGaCGUcgCCGCa -3'
miRNA:   3'- -GGGCGGCUg-----------CGGAGC------------AGGC-GCG--GGUG- -5'
5581 5' -64.1 NC_001806.1 + 84096 0.66 0.583113
Target:  5'- gCCGCgGAgGCC-CGUCgCGCcacgGUCCGCc -3'
miRNA:   3'- gGGCGgCUgCGGaGCAG-GCG----CGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 115085 0.66 0.583113
Target:  5'- gCCUgggGCCGGCccaGCC-CGUCCccguguucggguGCGCCCAg -3'
miRNA:   3'- -GGG---CGGCUG---CGGaGCAGG------------CGCGGGUg -5'
5581 5' -64.1 NC_001806.1 + 21992 0.66 0.554788
Target:  5'- -aCGCCGACGCgaCcUCCGgCGCCUucuACg -3'
miRNA:   3'- ggGCGGCUGCGgaGcAGGC-GCGGG---UG- -5'
5581 5' -64.1 NC_001806.1 + 74172 0.66 0.573633
Target:  5'- aCCGCCgguuucacGugGCUUCGgccgccgUCGUGCCCGu -3'
miRNA:   3'- gGGCGG--------CugCGGAGCa------GGCGCGGGUg -5'
5581 5' -64.1 NC_001806.1 + 106872 0.66 0.583113
Target:  5'- -aCGCgGGCGCCgagcaGggcCCGCGCCCc- -3'
miRNA:   3'- ggGCGgCUGCGGag---Ca--GGCGCGGGug -5'
5581 5' -64.1 NC_001806.1 + 75623 0.66 0.573633
Target:  5'- -gCGCC-ACGCgaCG-CCGCGCCgACg -3'
miRNA:   3'- ggGCGGcUGCGgaGCaGGCGCGGgUG- -5'
5581 5' -64.1 NC_001806.1 + 125861 0.66 0.56419
Target:  5'- gCCGCgGACGCCg---UgGCGCCC-Cg -3'
miRNA:   3'- gGGCGgCUGCGGagcaGgCGCGGGuG- -5'
5581 5' -64.1 NC_001806.1 + 88630 0.66 0.56419
Target:  5'- gUCCGCggaGAUGCCgCGgaacgaCGCGCCCGg -3'
miRNA:   3'- -GGGCGg--CUGCGGaGCag----GCGCGGGUg -5'
5581 5' -64.1 NC_001806.1 + 4282 0.66 0.573633
Target:  5'- aCCCGCCGGgGCUgccCGgCCGUgaagcgGCCCGu -3'
miRNA:   3'- -GGGCGGCUgCGGa--GCaGGCG------CGGGUg -5'
5581 5' -64.1 NC_001806.1 + 30255 0.66 0.554788
Target:  5'- gCCGCCuccGGgGCC-CGgcccCCGCGCCC-Cg -3'
miRNA:   3'- gGGCGG---CUgCGGaGCa---GGCGCGGGuG- -5'
5581 5' -64.1 NC_001806.1 + 147284 0.66 0.554788
Target:  5'- gCCGCCGAggaCGUCagGggggucCCGgGCCCACc -3'
miRNA:   3'- gGGCGGCU---GCGGagCa-----GGCgCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.