miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5581 5' -64.1 NC_001806.1 + 9659 0.65 0.60789
Target:  5'- gCCCGCCaggcACGCCUgCG-CCaacaggucauacaCGCCCACa -3'
miRNA:   3'- -GGGCGGc---UGCGGA-GCaGGc------------GCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 4925 0.75 0.188595
Target:  5'- cCCCGgCGuccuCGCCggCGUCgGUGCCCGCc -3'
miRNA:   3'- -GGGCgGCu---GCGGa-GCAGgCGCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 107832 0.75 0.188595
Target:  5'- gCUCaCCGGCGUCgaCGUCCGaCGCCCACu -3'
miRNA:   3'- -GGGcGGCUGCGGa-GCAGGC-GCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 2210 0.75 0.188595
Target:  5'- gCCCGCCcaGGCgGCCgUGUCCG-GCCCGCa -3'
miRNA:   3'- -GGGCGG--CUG-CGGaGCAGGCgCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 77388 0.74 0.197608
Target:  5'- -gCGCgGGCGCggCGgCCGCGCCCGCg -3'
miRNA:   3'- ggGCGgCUGCGgaGCaGGCGCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 132738 0.74 0.202254
Target:  5'- gCCCGgCGugGCCUCGgcggcagCCGgaugccuccUGCCCGCg -3'
miRNA:   3'- -GGGCgGCugCGGAGCa------GGC---------GCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 147915 0.74 0.202254
Target:  5'- gCCCGuCCGGCcCCUCGgCCGC-CCCGCc -3'
miRNA:   3'- -GGGC-GGCUGcGGAGCaGGCGcGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 30175 0.74 0.211831
Target:  5'- cCCCGCCccgGGCcCCccgCGUCCGCGgCCGCg -3'
miRNA:   3'- -GGGCGG---CUGcGGa--GCAGGCGCgGGUG- -5'
5581 5' -64.1 NC_001806.1 + 308 0.73 0.226925
Target:  5'- cCCCGCCccccACGCC-CG-CCGCGCgCGCg -3'
miRNA:   3'- -GGGCGGc---UGCGGaGCaGGCGCGgGUG- -5'
5581 5' -64.1 NC_001806.1 + 23256 0.75 0.184226
Target:  5'- gCCGCCGcCGCCUcCG-CCGCGCCgCGg -3'
miRNA:   3'- gGGCGGCuGCGGA-GCaGGCGCGG-GUg -5'
5581 5' -64.1 NC_001806.1 + 52877 0.75 0.183794
Target:  5'- aCCGCCGGCGgcgacgugccccuCCUCGUCCG-GCgCGCg -3'
miRNA:   3'- gGGCGGCUGC-------------GGAGCAGGCgCGgGUG- -5'
5581 5' -64.1 NC_001806.1 + 53770 0.75 0.175754
Target:  5'- aCCGCCGACGCCgUCGacgagCCGCaggcagGCCCGa -3'
miRNA:   3'- gGGCGGCUGCGG-AGCa----GGCG------CGGGUg -5'
5581 5' -64.1 NC_001806.1 + 22751 0.79 0.093789
Target:  5'- gCCaCGCCGACGCCgacgacgacgccgggCG-CCGCGCCCAg -3'
miRNA:   3'- -GG-GCGGCUGCGGa--------------GCaGGCGCGGGUg -5'
5581 5' -64.1 NC_001806.1 + 22505 0.78 0.113941
Target:  5'- uCCUGCUGACcaGCCUgCG-CCGCGCCUACg -3'
miRNA:   3'- -GGGCGGCUG--CGGA-GCaGGCGCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 53280 0.78 0.116764
Target:  5'- cCCCGCCGuugagccccuCGCC-CGUCCuCGCCCGCc -3'
miRNA:   3'- -GGGCGGCu---------GCGGaGCAGGcGCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 82539 0.76 0.15239
Target:  5'- uCCCGCCauGGCGCCcgcgaugggagCGUgCGUGCCCGCg -3'
miRNA:   3'- -GGGCGG--CUGCGGa----------GCAgGCGCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 150233 0.75 0.162534
Target:  5'- uCCCGCCGACgcaacaggggcuugGCCUgCGUCgGUGCCC-Cg -3'
miRNA:   3'- -GGGCGGCUG--------------CGGA-GCAGgCGCGGGuG- -5'
5581 5' -64.1 NC_001806.1 + 26760 0.75 0.163698
Target:  5'- uUCCGCCG-CGCCUCGcCCucCGCCUGCg -3'
miRNA:   3'- -GGGCGGCuGCGGAGCaGGc-GCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 23070 0.75 0.17165
Target:  5'- gCCGCCGugGCCgcCGUgCGCGCCg-- -3'
miRNA:   3'- gGGCGGCugCGGa-GCAgGCGCGGgug -5'
5581 5' -64.1 NC_001806.1 + 42922 0.75 0.175754
Target:  5'- gCCCGcCCGACGCUUgGUagaGCGCCCGa -3'
miRNA:   3'- -GGGC-GGCUGCGGAgCAgg-CGCGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.