miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5581 5' -64.1 NC_001806.1 + 308 0.73 0.226925
Target:  5'- cCCCGCCccccACGCC-CG-CCGCGCgCGCg -3'
miRNA:   3'- -GGGCGGc---UGCGGaGCaGGCGCGgGUG- -5'
5581 5' -64.1 NC_001806.1 + 349 0.71 0.30305
Target:  5'- aCCGCCGccCGCCUuuuuugcgCGcgCgCGCGCCCGCg -3'
miRNA:   3'- gGGCGGCu-GCGGA--------GCa-G-GCGCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 1287 0.71 0.323194
Target:  5'- gCCGCCGuCGuCUUCGUCCcagGCGCCUu- -3'
miRNA:   3'- gGGCGGCuGC-GGAGCAGG---CGCGGGug -5'
5581 5' -64.1 NC_001806.1 + 1383 0.69 0.389478
Target:  5'- cCCCGCCGcCGCCagcaCGgugCCGCugcgGCCCGu -3'
miRNA:   3'- -GGGCGGCuGCGGa---GCa--GGCG----CGGGUg -5'
5581 5' -64.1 NC_001806.1 + 1710 0.71 0.31637
Target:  5'- cCCCgagGCCGcCGCCcggcCGUCCaGCGCCgGCa -3'
miRNA:   3'- -GGG---CGGCuGCGGa---GCAGG-CGCGGgUG- -5'
5581 5' -64.1 NC_001806.1 + 2210 0.75 0.188595
Target:  5'- gCCCGCCcaGGCgGCCgUGUCCG-GCCCGCa -3'
miRNA:   3'- -GGGCGG--CUG-CGGaGCAGGCgCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 2317 0.72 0.259843
Target:  5'- cCCCGCCGcCgGCCagGUCCuCGCCCGg -3'
miRNA:   3'- -GGGCGGCuG-CGGagCAGGcGCGGGUg -5'
5581 5' -64.1 NC_001806.1 + 2877 0.66 0.592623
Target:  5'- -gCGuCCGA-GCCgggggCGUCCGCGCCg-- -3'
miRNA:   3'- ggGC-GGCUgCGGa----GCAGGCGCGGgug -5'
5581 5' -64.1 NC_001806.1 + 3008 0.68 0.481628
Target:  5'- gCCGCCaGCGCgUCGgCgGCGUCCGg -3'
miRNA:   3'- gGGCGGcUGCGgAGCaGgCGCGGGUg -5'
5581 5' -64.1 NC_001806.1 + 3484 0.68 0.455397
Target:  5'- -gCGcCCGGCGUCgUCGUCgGCGUCgGCg -3'
miRNA:   3'- ggGC-GGCUGCGG-AGCAGgCGCGGgUG- -5'
5581 5' -64.1 NC_001806.1 + 3694 0.68 0.438344
Target:  5'- cCCCGUCaGCGCCgCGUucUCGCGCgCCAa -3'
miRNA:   3'- -GGGCGGcUGCGGaGCA--GGCGCG-GGUg -5'
5581 5' -64.1 NC_001806.1 + 4214 0.67 0.526882
Target:  5'- cCCCGCUGACGUaccCGUCgCGauaGCgCGCg -3'
miRNA:   3'- -GGGCGGCUGCGga-GCAG-GCg--CGgGUG- -5'
5581 5' -64.1 NC_001806.1 + 4282 0.66 0.573633
Target:  5'- aCCCGCCGGgGCUgccCGgCCGUgaagcgGCCCGu -3'
miRNA:   3'- -GGGCGGCUgCGGa--GCaGGCG------CGGGUg -5'
5581 5' -64.1 NC_001806.1 + 4345 0.67 0.536129
Target:  5'- gCCCGgCGGCG-CUCGaUgCG-GCCCGCg -3'
miRNA:   3'- -GGGCgGCUGCgGAGC-AgGCgCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 4375 0.69 0.429956
Target:  5'- gCCGCgGGgGuCCUCG-CCGCcGCCCGg -3'
miRNA:   3'- gGGCGgCUgC-GGAGCaGGCG-CGGGUg -5'
5581 5' -64.1 NC_001806.1 + 4462 0.7 0.359688
Target:  5'- gCUGCCGGCGCCgcgcucgacggacccCGcCCGacgGCCCGCg -3'
miRNA:   3'- gGGCGGCUGCGGa--------------GCaGGCg--CGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 4925 0.75 0.188595
Target:  5'- cCCCGgCGuccuCGCCggCGUCgGUGCCCGCc -3'
miRNA:   3'- -GGGCgGCu---GCGGa-GCAGgCGCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 5026 0.67 0.545433
Target:  5'- cCCCGCCcu--CCUCcgucUCCGCGcCCCACc -3'
miRNA:   3'- -GGGCGGcugcGGAGc---AGGCGC-GGGUG- -5'
5581 5' -64.1 NC_001806.1 + 5338 0.7 0.337169
Target:  5'- cCCCuCCcGCGCUUCGUCCGCGUauCgGCg -3'
miRNA:   3'- -GGGcGGcUGCGGAGCAGGCGCG--GgUG- -5'
5581 5' -64.1 NC_001806.1 + 5576 0.69 0.421662
Target:  5'- cCCCGCCccGACGCCggcacgcCGggggcCCGUGgCCGCg -3'
miRNA:   3'- -GGGCGG--CUGCGGa------GCa----GGCGCgGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.