miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5584 3' -63.1 NC_001806.1 + 121764 1.09 0.000612
Target:  5'- uGCUGCAGGCCCCCCGCCGUCCUUGCAu -3'
miRNA:   3'- -CGACGUCCGGGGGGCGGCAGGAACGU- -5'
5584 3' -63.1 NC_001806.1 + 69235 0.74 0.206964
Target:  5'- uGCUGCAGcucggggagcaGCCCUCCGCCGgcgCCcaGCAg -3'
miRNA:   3'- -CGACGUC-----------CGGGGGGCGGCa--GGaaCGU- -5'
5584 3' -63.1 NC_001806.1 + 125843 0.74 0.211933
Target:  5'- cGCcGCGGGCCCCCgGCCG-CC--GCGg -3'
miRNA:   3'- -CGaCGUCCGGGGGgCGGCaGGaaCGU- -5'
5584 3' -63.1 NC_001806.1 + 142218 0.72 0.249643
Target:  5'- gGCUGCAGGCCCgCUucaUCGUCCggcgGCAg -3'
miRNA:   3'- -CGACGUCCGGGgGGc--GGCAGGaa--CGU- -5'
5584 3' -63.1 NC_001806.1 + 29718 0.72 0.267432
Target:  5'- cCUGaucGcGCCCCCCGuuGUCuCUUGCAg -3'
miRNA:   3'- cGACgu-C-CGGGGGGCggCAG-GAACGU- -5'
5584 3' -63.1 NC_001806.1 + 30178 0.71 0.299333
Target:  5'- cGCccCGGGCCCCCCGC-GUCCgcgGCc -3'
miRNA:   3'- -CGacGUCCGGGGGGCGgCAGGaa-CGu -5'
5584 3' -63.1 NC_001806.1 + 5516 0.71 0.306057
Target:  5'- gGCcGCcGGCCCCCCGCCccCCcgGCGg -3'
miRNA:   3'- -CGaCGuCCGGGGGGCGGcaGGaaCGU- -5'
5584 3' -63.1 NC_001806.1 + 78780 0.71 0.319849
Target:  5'- cGCUcGCGGGCCggaCGCCG-CCUUGCGc -3'
miRNA:   3'- -CGA-CGUCCGGgggGCGGCaGGAACGU- -5'
5584 3' -63.1 NC_001806.1 + 74880 0.7 0.326917
Target:  5'- cCUGCGGGCCuCCCUGCCGg-CggGCu -3'
miRNA:   3'- cGACGUCCGG-GGGGCGGCagGaaCGu -5'
5584 3' -63.1 NC_001806.1 + 70272 0.7 0.334101
Target:  5'- aGCUGCAGccCCCCCCGCCccCCgagguggGCAc -3'
miRNA:   3'- -CGACGUCc-GGGGGGCGGcaGGaa-----CGU- -5'
5584 3' -63.1 NC_001806.1 + 104914 0.7 0.3414
Target:  5'- uGCUgGCGuucguGGCCCucauCCCGCCGaCCUUGCc -3'
miRNA:   3'- -CGA-CGU-----CCGGG----GGGCGGCaGGAACGu -5'
5584 3' -63.1 NC_001806.1 + 88064 0.7 0.348813
Target:  5'- gGCguggGCAGGCCCCUgGCCG-CCa-GCu -3'
miRNA:   3'- -CGa---CGUCCGGGGGgCGGCaGGaaCGu -5'
5584 3' -63.1 NC_001806.1 + 20353 0.7 0.348813
Target:  5'- gGCgGCccuuGGGCCgCCCGCCGUCCcgUUGg- -3'
miRNA:   3'- -CGaCG----UCCGGgGGGCGGCAGG--AACgu -5'
5584 3' -63.1 NC_001806.1 + 35458 0.7 0.356341
Target:  5'- uCUGCuGGgCCCCUGuuGUCCgUGCc -3'
miRNA:   3'- cGACGuCCgGGGGGCggCAGGaACGu -5'
5584 3' -63.1 NC_001806.1 + 133064 0.7 0.367069
Target:  5'- cGCUGCGGcaGCUCCugggugggguaauggCCGCCGUCUgccUGCAg -3'
miRNA:   3'- -CGACGUC--CGGGG---------------GGCGGCAGGa--ACGU- -5'
5584 3' -63.1 NC_001806.1 + 84050 0.69 0.3796
Target:  5'- --cGCcGGCaCCCCCGCCGUCUggGa- -3'
miRNA:   3'- cgaCGuCCG-GGGGGCGGCAGGaaCgu -5'
5584 3' -63.1 NC_001806.1 + 31099 0.69 0.3796
Target:  5'- gGCUGCGGGCCgcgguCCCCGgCUGgagCCgccGCAc -3'
miRNA:   3'- -CGACGUCCGG-----GGGGC-GGCa--GGaa-CGU- -5'
5584 3' -63.1 NC_001806.1 + 135780 0.69 0.387576
Target:  5'- aGCUGCGGcgcccGCCCCCCcUgGUCCUggcccGCAg -3'
miRNA:   3'- -CGACGUC-----CGGGGGGcGgCAGGAa----CGU- -5'
5584 3' -63.1 NC_001806.1 + 74849 0.69 0.387576
Target:  5'- gGCUaaAGGCCUguCCgGCCGUCCUgGCGa -3'
miRNA:   3'- -CGAcgUCCGGG--GGgCGGCAGGAaCGU- -5'
5584 3' -63.1 NC_001806.1 + 103789 0.69 0.403856
Target:  5'- uGCUGCAGaCCCCCgggcggCGCCG-CCgcgGCGg -3'
miRNA:   3'- -CGACGUCcGGGGG------GCGGCaGGaa-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.