Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5584 | 3' | -63.1 | NC_001806.1 | + | 114570 | 0.66 | 0.596285 |
Target: 5'- cGCgGCAGGUCCCCC-UgGUCCccccgGCu -3' miRNA: 3'- -CGaCGUCCGGGGGGcGgCAGGaa---CGu -5' |
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5584 | 3' | -63.1 | NC_001806.1 | + | 20353 | 0.7 | 0.348813 |
Target: 5'- gGCgGCccuuGGGCCgCCCGCCGUCCcgUUGg- -3' miRNA: 3'- -CGaCG----UCCGGgGGGCGGCAGG--AACgu -5' |
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5584 | 3' | -63.1 | NC_001806.1 | + | 35458 | 0.7 | 0.356341 |
Target: 5'- uCUGCuGGgCCCCUGuuGUCCgUGCc -3' miRNA: 3'- cGACGuCCgGGGGGCggCAGGaACGu -5' |
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5584 | 3' | -63.1 | NC_001806.1 | + | 133064 | 0.7 | 0.367069 |
Target: 5'- cGCUGCGGcaGCUCCugggugggguaauggCCGCCGUCUgccUGCAg -3' miRNA: 3'- -CGACGUC--CGGGG---------------GGCGGCAGGa--ACGU- -5' |
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5584 | 3' | -63.1 | NC_001806.1 | + | 31099 | 0.69 | 0.3796 |
Target: 5'- gGCUGCGGGCCgcgguCCCCGgCUGgagCCgccGCAc -3' miRNA: 3'- -CGACGUCCGG-----GGGGC-GGCa--GGaa-CGU- -5' |
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5584 | 3' | -63.1 | NC_001806.1 | + | 84050 | 0.69 | 0.3796 |
Target: 5'- --cGCcGGCaCCCCCGCCGUCUggGa- -3' miRNA: 3'- cgaCGuCCG-GGGGGCGGCAGGaaCgu -5' |
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5584 | 3' | -63.1 | NC_001806.1 | + | 135780 | 0.69 | 0.387576 |
Target: 5'- aGCUGCGGcgcccGCCCCCCcUgGUCCUggcccGCAg -3' miRNA: 3'- -CGACGUC-----CGGGGGGcGgCAGGAa----CGU- -5' |
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5584 | 3' | -63.1 | NC_001806.1 | + | 74849 | 0.69 | 0.387576 |
Target: 5'- gGCUaaAGGCCUguCCgGCCGUCCUgGCGa -3' miRNA: 3'- -CGAcgUCCGGG--GGgCGGCAGGAaCGU- -5' |
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5584 | 3' | -63.1 | NC_001806.1 | + | 26530 | 0.69 | 0.403856 |
Target: 5'- cGCcGguGGgCCCCCGCC-UUCUUGUu -3' miRNA: 3'- -CGaCguCCgGGGGGCGGcAGGAACGu -5' |
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5584 | 3' | -63.1 | NC_001806.1 | + | 88064 | 0.7 | 0.348813 |
Target: 5'- gGCguggGCAGGCCCCUgGCCG-CCa-GCu -3' miRNA: 3'- -CGa---CGUCCGGGGGgCGGCaGGaaCGu -5' |
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5584 | 3' | -63.1 | NC_001806.1 | + | 104914 | 0.7 | 0.3414 |
Target: 5'- uGCUgGCGuucguGGCCCucauCCCGCCGaCCUUGCc -3' miRNA: 3'- -CGA-CGU-----CCGGG----GGGCGGCaGGAACGu -5' |
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5584 | 3' | -63.1 | NC_001806.1 | + | 70272 | 0.7 | 0.334101 |
Target: 5'- aGCUGCAGccCCCCCCGCCccCCgagguggGCAc -3' miRNA: 3'- -CGACGUCc-GGGGGGCGGcaGGaa-----CGU- -5' |
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5584 | 3' | -63.1 | NC_001806.1 | + | 69235 | 0.74 | 0.206964 |
Target: 5'- uGCUGCAGcucggggagcaGCCCUCCGCCGgcgCCcaGCAg -3' miRNA: 3'- -CGACGUC-----------CGGGGGGCGGCa--GGaaCGU- -5' |
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5584 | 3' | -63.1 | NC_001806.1 | + | 125843 | 0.74 | 0.211933 |
Target: 5'- cGCcGCGGGCCCCCgGCCG-CC--GCGg -3' miRNA: 3'- -CGaCGUCCGGGGGgCGGCaGGaaCGU- -5' |
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5584 | 3' | -63.1 | NC_001806.1 | + | 142218 | 0.72 | 0.249643 |
Target: 5'- gGCUGCAGGCCCgCUucaUCGUCCggcgGCAg -3' miRNA: 3'- -CGACGUCCGGGgGGc--GGCAGGaa--CGU- -5' |
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5584 | 3' | -63.1 | NC_001806.1 | + | 29718 | 0.72 | 0.267432 |
Target: 5'- cCUGaucGcGCCCCCCGuuGUCuCUUGCAg -3' miRNA: 3'- cGACgu-C-CGGGGGGCggCAG-GAACGU- -5' |
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5584 | 3' | -63.1 | NC_001806.1 | + | 30178 | 0.71 | 0.299333 |
Target: 5'- cGCccCGGGCCCCCCGC-GUCCgcgGCc -3' miRNA: 3'- -CGacGUCCGGGGGGCGgCAGGaa-CGu -5' |
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5584 | 3' | -63.1 | NC_001806.1 | + | 5516 | 0.71 | 0.306057 |
Target: 5'- gGCcGCcGGCCCCCCGCCccCCcgGCGg -3' miRNA: 3'- -CGaCGuCCGGGGGGCGGcaGGaaCGU- -5' |
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5584 | 3' | -63.1 | NC_001806.1 | + | 78780 | 0.71 | 0.319849 |
Target: 5'- cGCUcGCGGGCCggaCGCCG-CCUUGCGc -3' miRNA: 3'- -CGA-CGUCCGGgggGCGGCaGGAACGU- -5' |
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5584 | 3' | -63.1 | NC_001806.1 | + | 74880 | 0.7 | 0.326917 |
Target: 5'- cCUGCGGGCCuCCCUGCCGg-CggGCu -3' miRNA: 3'- cGACGUCCGG-GGGGCGGCagGaaCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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