miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5584 3' -63.1 NC_001806.1 + 1450 0.67 0.482135
Target:  5'- gGCgGCAGGgCCCCCggGCCGUCgUcGUc -3'
miRNA:   3'- -CGaCGUCCgGGGGG--CGGCAGgAaCGu -5'
5584 3' -63.1 NC_001806.1 + 1937 0.67 0.491289
Target:  5'- uGCggcGCAGGUCCCgCGCCG-CCggccaGCGc -3'
miRNA:   3'- -CGa--CGUCCGGGGgGCGGCaGGaa---CGU- -5'
5584 3' -63.1 NC_001806.1 + 2301 0.66 0.585529
Target:  5'- gGCgGCccccccgAGGCCCCgCCGCCGgccaggUCCUcGCc -3'
miRNA:   3'- -CGaCG-------UCCGGGG-GGCGGC------AGGAaCGu -5'
5584 3' -63.1 NC_001806.1 + 5516 0.71 0.306057
Target:  5'- gGCcGCcGGCCCCCCGCCccCCcgGCGg -3'
miRNA:   3'- -CGaCGuCCGGGGGGCGGcaGGaaCGU- -5'
5584 3' -63.1 NC_001806.1 + 20147 0.66 0.576755
Target:  5'- cGCcGgAGagacccGCCCCCCGCCGcCCggGCc -3'
miRNA:   3'- -CGaCgUC------CGGGGGGCGGCaGGaaCGu -5'
5584 3' -63.1 NC_001806.1 + 20353 0.7 0.348813
Target:  5'- gGCgGCccuuGGGCCgCCCGCCGUCCcgUUGg- -3'
miRNA:   3'- -CGaCG----UCCGGgGGGCGGCAGG--AACgu -5'
5584 3' -63.1 NC_001806.1 + 22668 0.67 0.519216
Target:  5'- cGCcGCGGGgaUCCUCGCCGcCCUgggGCGg -3'
miRNA:   3'- -CGaCGUCCg-GGGGGCGGCaGGAa--CGU- -5'
5584 3' -63.1 NC_001806.1 + 22932 0.66 0.586505
Target:  5'- --cGCGGGCCccgcuuCCCCGCCGcgCC--GCAc -3'
miRNA:   3'- cgaCGUCCGG------GGGGCGGCa-GGaaCGU- -5'
5584 3' -63.1 NC_001806.1 + 26262 0.66 0.557372
Target:  5'- gGCaGCccGGGCCCCCCGCgG-CCgagacuaGCGa -3'
miRNA:   3'- -CGaCG--UCCGGGGGGCGgCaGGaa-----CGU- -5'
5584 3' -63.1 NC_001806.1 + 26530 0.69 0.403856
Target:  5'- cGCcGguGGgCCCCCGCC-UUCUUGUu -3'
miRNA:   3'- -CGaCguCCgGGGGGCGGcAGGAACGu -5'
5584 3' -63.1 NC_001806.1 + 29718 0.72 0.267432
Target:  5'- cCUGaucGcGCCCCCCGuuGUCuCUUGCAg -3'
miRNA:   3'- cGACgu-C-CGGGGGGCggCAG-GAACGU- -5'
5584 3' -63.1 NC_001806.1 + 29760 0.69 0.42056
Target:  5'- --cGCccGCCCCCCGCCGgacgCCccGCGc -3'
miRNA:   3'- cgaCGucCGGGGGGCGGCa---GGaaCGU- -5'
5584 3' -63.1 NC_001806.1 + 30049 0.68 0.472161
Target:  5'- gGCcgGaCGGGCCCccuugucaacagaCCCGCCccCCUUGCAa -3'
miRNA:   3'- -CGa-C-GUCCGGG-------------GGGCGGcaGGAACGU- -5'
5584 3' -63.1 NC_001806.1 + 30140 0.67 0.509834
Target:  5'- ---aCAGGCCCCCCGCggCGcCCaUGCc -3'
miRNA:   3'- cgacGUCCGGGGGGCG--GCaGGaACGu -5'
5584 3' -63.1 NC_001806.1 + 30178 0.71 0.299333
Target:  5'- cGCccCGGGCCCCCCGC-GUCCgcgGCc -3'
miRNA:   3'- -CGacGUCCGGGGGGCGgCAGGaa-CGu -5'
5584 3' -63.1 NC_001806.1 + 31099 0.69 0.3796
Target:  5'- gGCUGCGGGCCgcgguCCCCGgCUGgagCCgccGCAc -3'
miRNA:   3'- -CGACGUCCGG-----GGGGC-GGCa--GGaa-CGU- -5'
5584 3' -63.1 NC_001806.1 + 35458 0.7 0.356341
Target:  5'- uCUGCuGGgCCCCUGuuGUCCgUGCc -3'
miRNA:   3'- cGACGuCCgGGGGGCggCAGGaACGu -5'
5584 3' -63.1 NC_001806.1 + 38708 0.68 0.446382
Target:  5'- --gGCGGGgCCCCCGCCccaCCUccgGCAc -3'
miRNA:   3'- cgaCGUCCgGGGGGCGGca-GGAa--CGU- -5'
5584 3' -63.1 NC_001806.1 + 45754 0.68 0.429067
Target:  5'- cCUGCAccaCCCCCGCCGUCCgaacccagGCc -3'
miRNA:   3'- cGACGUccgGGGGGCGGCAGGaa------CGu -5'
5584 3' -63.1 NC_001806.1 + 47349 0.66 0.576755
Target:  5'- aGC-GCGGGCCCCgCGCUauGUaCCaUGCu -3'
miRNA:   3'- -CGaCGUCCGGGGgGCGG--CA-GGaACGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.