miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5584 5' -58.6 NC_001806.1 + 25399 0.66 0.826938
Target:  5'- --gGCGAGGGG-CGggaGGGGGcgagggGCGGUg -3'
miRNA:   3'- agaCGUUCUCCaGCag-CCCCC------UGCCA- -5'
5584 5' -58.6 NC_001806.1 + 148228 0.66 0.818595
Target:  5'- gCUGCAAGAGacaa-CGGGGGGCGcGa -3'
miRNA:   3'- aGACGUUCUCcagcaGCCCCCUGC-Ca -5'
5584 5' -58.6 NC_001806.1 + 3520 0.66 0.818595
Target:  5'- --gGCGucGGGGUCGUCgccccccgcgGGGGaGGCGGg -3'
miRNA:   3'- agaCGUu-CUCCAGCAG----------CCCC-CUGCCa -5'
5584 5' -58.6 NC_001806.1 + 55079 0.66 0.801431
Target:  5'- --gGCuGGAGGgucagaGaCGGGGGGCGGa -3'
miRNA:   3'- agaCGuUCUCCag----CaGCCCCCUGCCa -5'
5584 5' -58.6 NC_001806.1 + 34292 0.67 0.774606
Target:  5'- --gGCGGGAuGGgguuuagCGgCGGGGGGCGGc -3'
miRNA:   3'- agaCGUUCU-CCa------GCaGCCCCCUGCCa -5'
5584 5' -58.6 NC_001806.1 + 10241 0.67 0.76541
Target:  5'- --aGUAGGucuGGUCGUCGuGGGcGAUGGc -3'
miRNA:   3'- agaCGUUCu--CCAGCAGC-CCC-CUGCCa -5'
5584 5' -58.6 NC_001806.1 + 6082 0.68 0.717901
Target:  5'- --gGCGGGcccGGG-CGgCGGGGGGCGGg -3'
miRNA:   3'- agaCGUUC---UCCaGCaGCCCCCUGCCa -5'
5584 5' -58.6 NC_001806.1 + 151443 0.68 0.717901
Target:  5'- --gGCGGGGGG-CGgCGGcGGGGCGGc -3'
miRNA:   3'- agaCGUUCUCCaGCaGCC-CCCUGCCa -5'
5584 5' -58.6 NC_001806.1 + 145671 0.68 0.688485
Target:  5'- cUCUgGCAcgcGGGGGUgggaaggGUCGGGGGAgGGg -3'
miRNA:   3'- -AGA-CGU---UCUCCAg------CAGCCCCCUgCCa -5'
5584 5' -58.6 NC_001806.1 + 151278 0.69 0.668636
Target:  5'- --cGguGGGGGcCGgggcCGGGGGGCGGc -3'
miRNA:   3'- agaCguUCUCCaGCa---GCCCCCUGCCa -5'
5584 5' -58.6 NC_001806.1 + 66541 0.69 0.648674
Target:  5'- --cGCGAGGGGgaaGUCGGGGuuuCGGUu -3'
miRNA:   3'- agaCGUUCUCCag-CAGCCCCcu-GCCA- -5'
5584 5' -58.6 NC_001806.1 + 143814 0.69 0.63867
Target:  5'- --aGgGAGGGGgUGaCGGGGGACGGg -3'
miRNA:   3'- agaCgUUCUCCaGCaGCCCCCUGCCa -5'
5584 5' -58.6 NC_001806.1 + 33974 0.69 0.628661
Target:  5'- aUCgUGCGggccGGGGGUCGcCGGggcaGGGGCGGg -3'
miRNA:   3'- -AG-ACGU----UCUCCAGCaGCC----CCCUGCCa -5'
5584 5' -58.6 NC_001806.1 + 145544 0.7 0.608659
Target:  5'- cCUGgGGGGGGggaGUgCGGGGGAgGGg -3'
miRNA:   3'- aGACgUUCUCCag-CA-GCCCCCUgCCa -5'
5584 5' -58.6 NC_001806.1 + 105097 0.7 0.598679
Target:  5'- aUCUGCAGGgcggcGGGUCGUggCGGGaGGAuUGGg -3'
miRNA:   3'- -AGACGUUC-----UCCAGCA--GCCC-CCU-GCCa -5'
5584 5' -58.6 NC_001806.1 + 15093 0.7 0.588723
Target:  5'- --cGCGGGGGaGUUGuugggaUCGGGGGAUGGg -3'
miRNA:   3'- agaCGUUCUC-CAGC------AGCCCCCUGCCa -5'
5584 5' -58.6 NC_001806.1 + 118048 0.7 0.578797
Target:  5'- gCUGUuGGuGGUgGUCGaGGGGCGGUa -3'
miRNA:   3'- aGACGuUCuCCAgCAGCcCCCUGCCA- -5'
5584 5' -58.6 NC_001806.1 + 151098 0.7 0.55906
Target:  5'- --cGCGGG-GGUCG-CGGGGGucGCGGg -3'
miRNA:   3'- agaCGUUCuCCAGCaGCCCCC--UGCCa -5'
5584 5' -58.6 NC_001806.1 + 55628 0.71 0.529832
Target:  5'- --gGCuuGGGGGUUGUUGGGGGGCuGGc -3'
miRNA:   3'- agaCGu-UCUCCAGCAGCCCCCUG-CCa -5'
5584 5' -58.6 NC_001806.1 + 151069 0.71 0.529832
Target:  5'- --cGCGcGGGGGUCG-CGGGGGucGCGGg -3'
miRNA:   3'- agaCGU-UCUCCAGCaGCCCCC--UGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.