miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5585 5' -59.9 NC_001806.1 + 121500 1.1 0.001108
Target:  5'- uCGCUCUGUCCACCGGGAAGCAGGGCCc -3'
miRNA:   3'- -GCGAGACAGGUGGCCCUUCGUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 24105 0.79 0.144287
Target:  5'- uGCUgCUGUCCACgCGGGAccuGGCcuucgccGGGGCCg -3'
miRNA:   3'- gCGA-GACAGGUG-GCCCU---UCG-------UCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 67200 0.78 0.172047
Target:  5'- cCGCUCgGUCUGCCGGccuGGCGGGGCg -3'
miRNA:   3'- -GCGAGaCAGGUGGCCcu-UCGUCCCGg -5'
5585 5' -59.9 NC_001806.1 + 66770 0.76 0.229846
Target:  5'- aGCUCggcguccagGUCCacgaacgcacauGCCGGGAggaucacggccgAGCGGGGCCg -3'
miRNA:   3'- gCGAGa--------CAGG------------UGGCCCU------------UCGUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 56715 0.75 0.276918
Target:  5'- uCGCUCUggGUCCuCCGGGggGCGGcGGg- -3'
miRNA:   3'- -GCGAGA--CAGGuGGCCCuuCGUC-CCgg -5'
5585 5' -59.9 NC_001806.1 + 27009 0.75 0.289829
Target:  5'- gGCUCgGUUCcggcGCCGGGuGGCGGaGGCCg -3'
miRNA:   3'- gCGAGaCAGG----UGGCCCuUCGUC-CCGG- -5'
5585 5' -59.9 NC_001806.1 + 20708 0.74 0.317055
Target:  5'- cCGUUCgggguggGcCCGCCgGGGggGCggGGGGCCg -3'
miRNA:   3'- -GCGAGa------CaGGUGG-CCCuuCG--UCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 117815 0.74 0.324156
Target:  5'- cCGCgaaacgCC-CCGGGAuGCAGGGCCa -3'
miRNA:   3'- -GCGagaca-GGuGGCCCUuCGUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 32974 0.74 0.324156
Target:  5'- -cCUUggGUCCGCCGGGGccccgGGCcGGGCCg -3'
miRNA:   3'- gcGAGa-CAGGUGGCCCU-----UCGuCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 20441 0.74 0.331375
Target:  5'- gGCUCguaUCUcauuaccgccgaACCGGGAAGuCGGGGCCc -3'
miRNA:   3'- gCGAGac-AGG------------UGGCCCUUC-GUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 101165 0.73 0.336498
Target:  5'- gCGCggugGUCCACguuaauCGGGAguggguuauccggaGGCAGGGCCg -3'
miRNA:   3'- -GCGaga-CAGGUG------GCCCU--------------UCGUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 100378 0.73 0.346164
Target:  5'- aGCUCccgUCGCCGGGcGGCgcgGGGGCCg -3'
miRNA:   3'- gCGAGacaGGUGGCCCuUCG---UCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 86019 0.73 0.353734
Target:  5'- gCGCUUg----GCCGGGGagGGCAGGGCCg -3'
miRNA:   3'- -GCGAGacaggUGGCCCU--UCGUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 50483 0.73 0.369222
Target:  5'- gCGCcCUGcCC-CUGGGAAGCcccgcggucgugGGGGCCg -3'
miRNA:   3'- -GCGaGACaGGuGGCCCUUCG------------UCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 113373 0.73 0.369222
Target:  5'- gCGCUaUGUCCGgcggcguuCCGGGAcGCccGGGGCCu -3'
miRNA:   3'- -GCGAgACAGGU--------GGCCCUuCG--UCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 27833 0.72 0.409926
Target:  5'- gCGC-CggguugGUCC-CCGGGGA-CGGGGCCg -3'
miRNA:   3'- -GCGaGa-----CAGGuGGCCCUUcGUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 125270 0.72 0.417544
Target:  5'- aGCa-UGUCCGCCGGGAcgcaccgugacuaAGCGucccuGGGCCc -3'
miRNA:   3'- gCGagACAGGUGGCCCU-------------UCGU-----CCCGG- -5'
5585 5' -59.9 NC_001806.1 + 2625 0.71 0.444429
Target:  5'- aGCUCgg-CCACggcgcgCGGGGAGCAGuaGGCCu -3'
miRNA:   3'- gCGAGacaGGUG------GCCCUUCGUC--CCGG- -5'
5585 5' -59.9 NC_001806.1 + 3305 0.71 0.444429
Target:  5'- uGCggCgg-CgGCgGGGAAGCGGGGCCc -3'
miRNA:   3'- gCGa-GacaGgUGgCCCUUCGUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 62216 0.71 0.447969
Target:  5'- gCGCUCUgGUCCguaagggccgucagaGCgGGGGAGagggcuGGGGCCg -3'
miRNA:   3'- -GCGAGA-CAGG---------------UGgCCCUUCg-----UCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.