miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5585 5' -59.9 NC_001806.1 + 2222 0.66 0.752484
Target:  5'- gGCcgUGUCCggcccgcacaGCCGGuuGGcCAGGGCCg -3'
miRNA:   3'- gCGagACAGG----------UGGCCcuUC-GUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 2625 0.71 0.444429
Target:  5'- aGCUCgg-CCACggcgcgCGGGGAGCAGuaGGCCu -3'
miRNA:   3'- gCGAGacaGGUG------GCCCUUCGUC--CCGG- -5'
5585 5' -59.9 NC_001806.1 + 2931 0.66 0.770961
Target:  5'- cCGC-Cg--CCuCCGGGcGGCcGGGCCg -3'
miRNA:   3'- -GCGaGacaGGuGGCCCuUCGuCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 3305 0.71 0.444429
Target:  5'- uGCggCgg-CgGCgGGGAAGCGGGGCCc -3'
miRNA:   3'- gCGa-GacaGgUGgCCCUUCGUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 3330 0.67 0.675243
Target:  5'- cCGCgg-GUCCcuccgGCCgcGGGggGCuggcGGGCCg -3'
miRNA:   3'- -GCGagaCAGG-----UGG--CCCuuCGu---CCCGG- -5'
5585 5' -59.9 NC_001806.1 + 4276 0.7 0.517945
Target:  5'- aGCUCgacCCGCCGGGGcuGCccGGCCg -3'
miRNA:   3'- gCGAGacaGGUGGCCCUu-CGucCCGG- -5'
5585 5' -59.9 NC_001806.1 + 5066 0.7 0.5371
Target:  5'- cCGCUCgucgcgGUCUggGCuCGGGGugGGCGGcGGCCc -3'
miRNA:   3'- -GCGAGa-----CAGG--UG-GCCCU--UCGUC-CCGG- -5'
5585 5' -59.9 NC_001806.1 + 5942 0.7 0.50847
Target:  5'- gGCgg-GaCCGCCccaaGGggGCGGGGCCg -3'
miRNA:   3'- gCGagaCaGGUGGc---CCuuCGUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 9153 0.67 0.675243
Target:  5'- aGC-CUGgagggCCAUCGGGGAGaCAacGGCCg -3'
miRNA:   3'- gCGaGACa----GGUGGCCCUUC-GUc-CCGG- -5'
5585 5' -59.9 NC_001806.1 + 11871 0.67 0.675243
Target:  5'- aCGCUC-----GCCGGGGccagacGCGGGGCCg -3'
miRNA:   3'- -GCGAGacaggUGGCCCUu-----CGUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 20441 0.74 0.331375
Target:  5'- gGCUCguaUCUcauuaccgccgaACCGGGAAGuCGGGGCCc -3'
miRNA:   3'- gCGAGac-AGG------------UGGCCCUUC-GUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 20708 0.74 0.317055
Target:  5'- cCGUUCgggguggGcCCGCCgGGGggGCggGGGGCCg -3'
miRNA:   3'- -GCGAGa------CaGGUGG-CCCuuCG--UCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 21901 0.68 0.635558
Target:  5'- cCGCaUCgagcgCCGCCGGGcccgcgcGGCGGuGGCCg -3'
miRNA:   3'- -GCG-AGaca--GGUGGCCCu------UCGUC-CCGG- -5'
5585 5' -59.9 NC_001806.1 + 22864 0.66 0.752484
Target:  5'- gGCgacCUGgcggCCGucCCGGGGcuGGcCGGGGCCc -3'
miRNA:   3'- gCGa--GACa---GGU--GGCCCU--UC-GUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 23097 0.66 0.761777
Target:  5'- aGC-CUGgUCGCCGGGGccCuGGGCCc -3'
miRNA:   3'- gCGaGACaGGUGGCCCUucGuCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 23312 0.67 0.694918
Target:  5'- gGCcCgg-CCGCCcGGAGGCGGcGGCCc -3'
miRNA:   3'- gCGaGacaGGUGGcCCUUCGUC-CCGG- -5'
5585 5' -59.9 NC_001806.1 + 24105 0.79 0.144287
Target:  5'- uGCUgCUGUCCACgCGGGAccuGGCcuucgccGGGGCCg -3'
miRNA:   3'- gCGA-GACAGGUG-GCCCU---UCG-------UCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 24996 0.68 0.655436
Target:  5'- gGUgCUGUaacggGCCGGGAcggGGCGGGGCg -3'
miRNA:   3'- gCGaGACAgg---UGGCCCU---UCGUCCCGg -5'
5585 5' -59.9 NC_001806.1 + 25517 0.67 0.704685
Target:  5'- gCGCgg-GaCgCGCCGGGGagGGCuGGGGCCg -3'
miRNA:   3'- -GCGagaCaG-GUGGCCCU--UCG-UCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 25931 0.66 0.770961
Target:  5'- gCGCgcgCgg-CgGgCGuGGggGCGGGGCCg -3'
miRNA:   3'- -GCGa--GacaGgUgGC-CCuuCGUCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.