Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5585 | 5' | -59.9 | NC_001806.1 | + | 30746 | 0.66 | 0.771874 |
Target: 5'- cCGcCUCUuccgCCGCCGGGgccgcguccuccuccGcuuccgccuccucgGGCGGGGCCg -3' miRNA: 3'- -GC-GAGAca--GGUGGCCC---------------U--------------UCGUCCCGG- -5' |
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5585 | 5' | -59.9 | NC_001806.1 | + | 86019 | 0.73 | 0.353734 |
Target: 5'- gCGCUUg----GCCGGGGagGGCAGGGCCg -3' miRNA: 3'- -GCGAGacaggUGGCCCU--UCGUCCCGG- -5' |
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5585 | 5' | -59.9 | NC_001806.1 | + | 50483 | 0.73 | 0.369222 |
Target: 5'- gCGCcCUGcCC-CUGGGAAGCcccgcggucgugGGGGCCg -3' miRNA: 3'- -GCGaGACaGGuGGCCCUUCG------------UCCCGG- -5' |
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5585 | 5' | -59.9 | NC_001806.1 | + | 113373 | 0.73 | 0.369222 |
Target: 5'- gCGCUaUGUCCGgcggcguuCCGGGAcGCccGGGGCCu -3' miRNA: 3'- -GCGAgACAGGU--------GGCCCUuCG--UCCCGG- -5' |
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5585 | 5' | -59.9 | NC_001806.1 | + | 27833 | 0.72 | 0.409926 |
Target: 5'- gCGC-CggguugGUCC-CCGGGGA-CGGGGCCg -3' miRNA: 3'- -GCGaGa-----CAGGuGGCCCUUcGUCCCGG- -5' |
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5585 | 5' | -59.9 | NC_001806.1 | + | 125270 | 0.72 | 0.417544 |
Target: 5'- aGCa-UGUCCGCCGGGAcgcaccgugacuaAGCGucccuGGGCCc -3' miRNA: 3'- gCGagACAGGUGGCCCU-------------UCGU-----CCCGG- -5' |
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5585 | 5' | -59.9 | NC_001806.1 | + | 2625 | 0.71 | 0.444429 |
Target: 5'- aGCUCgg-CCACggcgcgCGGGGAGCAGuaGGCCu -3' miRNA: 3'- gCGAGacaGGUG------GCCCUUCGUC--CCGG- -5' |
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5585 | 5' | -59.9 | NC_001806.1 | + | 3305 | 0.71 | 0.444429 |
Target: 5'- uGCggCgg-CgGCgGGGAAGCGGGGCCc -3' miRNA: 3'- gCGa-GacaGgUGgCCCUUCGUCCCGG- -5' |
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5585 | 5' | -59.9 | NC_001806.1 | + | 62216 | 0.71 | 0.447969 |
Target: 5'- gCGCUCUgGUCCguaagggccgucagaGCgGGGGAGagggcuGGGGCCg -3' miRNA: 3'- -GCGAGA-CAGG---------------UGgCCCUUCg-----UCCCGG- -5' |
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5585 | 5' | -59.9 | NC_001806.1 | + | 100378 | 0.73 | 0.346164 |
Target: 5'- aGCUCccgUCGCCGGGcGGCgcgGGGGCCg -3' miRNA: 3'- gCGAGacaGGUGGCCCuUCG---UCCCGG- -5' |
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5585 | 5' | -59.9 | NC_001806.1 | + | 101165 | 0.73 | 0.336498 |
Target: 5'- gCGCggugGUCCACguuaauCGGGAguggguuauccggaGGCAGGGCCg -3' miRNA: 3'- -GCGaga-CAGGUG------GCCCU--------------UCGUCCCGG- -5' |
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5585 | 5' | -59.9 | NC_001806.1 | + | 20441 | 0.74 | 0.331375 |
Target: 5'- gGCUCguaUCUcauuaccgccgaACCGGGAAGuCGGGGCCc -3' miRNA: 3'- gCGAGac-AGG------------UGGCCCUUC-GUCCCGG- -5' |
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5585 | 5' | -59.9 | NC_001806.1 | + | 24105 | 0.79 | 0.144287 |
Target: 5'- uGCUgCUGUCCACgCGGGAccuGGCcuucgccGGGGCCg -3' miRNA: 3'- gCGA-GACAGGUG-GCCCU---UCG-------UCCCGG- -5' |
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5585 | 5' | -59.9 | NC_001806.1 | + | 67200 | 0.78 | 0.172047 |
Target: 5'- cCGCUCgGUCUGCCGGccuGGCGGGGCg -3' miRNA: 3'- -GCGAGaCAGGUGGCCcu-UCGUCCCGg -5' |
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5585 | 5' | -59.9 | NC_001806.1 | + | 66770 | 0.76 | 0.229846 |
Target: 5'- aGCUCggcguccagGUCCacgaacgcacauGCCGGGAggaucacggccgAGCGGGGCCg -3' miRNA: 3'- gCGAGa--------CAGG------------UGGCCCU------------UCGUCCCGG- -5' |
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5585 | 5' | -59.9 | NC_001806.1 | + | 56715 | 0.75 | 0.276918 |
Target: 5'- uCGCUCUggGUCCuCCGGGggGCGGcGGg- -3' miRNA: 3'- -GCGAGA--CAGGuGGCCCuuCGUC-CCgg -5' |
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5585 | 5' | -59.9 | NC_001806.1 | + | 27009 | 0.75 | 0.289829 |
Target: 5'- gGCUCgGUUCcggcGCCGGGuGGCGGaGGCCg -3' miRNA: 3'- gCGAGaCAGG----UGGCCCuUCGUC-CCGG- -5' |
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5585 | 5' | -59.9 | NC_001806.1 | + | 20708 | 0.74 | 0.317055 |
Target: 5'- cCGUUCgggguggGcCCGCCgGGGggGCggGGGGCCg -3' miRNA: 3'- -GCGAGa------CaGGUGG-CCCuuCG--UCCCGG- -5' |
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5585 | 5' | -59.9 | NC_001806.1 | + | 117815 | 0.74 | 0.324156 |
Target: 5'- cCGCgaaacgCC-CCGGGAuGCAGGGCCa -3' miRNA: 3'- -GCGagaca-GGuGGCCCUuCGUCCCGG- -5' |
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5585 | 5' | -59.9 | NC_001806.1 | + | 32974 | 0.74 | 0.324156 |
Target: 5'- -cCUUggGUCCGCCGGGGccccgGGCcGGGCCg -3' miRNA: 3'- gcGAGa-CAGGUGGCCCU-----UCGuCCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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