miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5588 3' -68.4 NC_001806.1 + 733 0.66 0.368458
Target:  5'- cCCGGCGCguCCCGCGcuccCUCGGGGGgGu -3'
miRNA:   3'- -GGUCGCG--GGGUGCcc--GGGCCCCCgCu -5'
5588 3' -68.4 NC_001806.1 + 42307 0.66 0.368458
Target:  5'- gCAGCGCUgacggUguCGGGgCgGGGGGCGu -3'
miRNA:   3'- gGUCGCGG-----GguGCCCgGgCCCCCGCu -5'
5588 3' -68.4 NC_001806.1 + 94773 0.66 0.380403
Target:  5'- gCgGGCGCUCUccguguuggaccauGCGcuGGCCCggacgcgGGGGGCGAc -3'
miRNA:   3'- -GgUCGCGGGG--------------UGC--CCGGG-------CCCCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 113385 0.66 0.414559
Target:  5'- gCGGCGUuccgggacgCCCG-GGGCCUggagcuGGGGGUGGg -3'
miRNA:   3'- gGUCGCG---------GGGUgCCCGGG------CCCCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 102067 0.66 0.38343
Target:  5'- cCCGGagGCCCCACGGGCgauggccuCCGaaGGGaCGGc -3'
miRNA:   3'- -GGUCg-CGGGGUGCCCG--------GGCc-CCC-GCU- -5'
5588 3' -68.4 NC_001806.1 + 1454 0.66 0.378896
Target:  5'- gCAGgGCCCC-CGGGCcgucgucgucgCCgcgcagcaccagcggGGGGGCGu -3'
miRNA:   3'- gGUCgCGGGGuGCCCG-----------GG---------------CCCCCGCu -5'
5588 3' -68.4 NC_001806.1 + 20103 0.66 0.398022
Target:  5'- gCCGGCGCCguCUGCGGGCgUCGGucgcgccGGGCc- -3'
miRNA:   3'- -GGUCGCGG--GGUGCCCG-GGCC-------CCCGcu -5'
5588 3' -68.4 NC_001806.1 + 66553 0.66 0.38343
Target:  5'- gUCGGgGUUUCGguuUGGGgCCGGGGGCGu -3'
miRNA:   3'- -GGUCgCGGGGU---GCCCgGGCCCCCGCu -5'
5588 3' -68.4 NC_001806.1 + 150136 0.66 0.386472
Target:  5'- cCCGGCGCCCCcaaagaauaucauuaGCaugcacGGCCCggcccccgauuuGGGGGCc- -3'
miRNA:   3'- -GGUCGCGGGG---------------UGc-----CCGGG------------CCCCCGcu -5'
5588 3' -68.4 NC_001806.1 + 49718 0.66 0.368458
Target:  5'- uCCGuGCGCUCCGCccuaGCCCuGGGGCa- -3'
miRNA:   3'- -GGU-CGCGGGGUGcc--CGGGcCCCCGcu -5'
5588 3' -68.4 NC_001806.1 + 42231 0.66 0.391066
Target:  5'- cCCGGC-CgCCGCGGcCCCGcGGGCGu -3'
miRNA:   3'- -GGUCGcGgGGUGCCcGGGCcCCCGCu -5'
5588 3' -68.4 NC_001806.1 + 83886 0.66 0.374398
Target:  5'- --uGCGCCCgucuccuggacugCACGgagggucGGCgCGGGGGCGGg -3'
miRNA:   3'- gguCGCGGG-------------GUGC-------CCGgGCCCCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 58974 0.66 0.38343
Target:  5'- uUCGGCGCCCUGCaGGaccaCCUGGcaGGGCGc -3'
miRNA:   3'- -GGUCGCGGGGUGcCC----GGGCC--CCCGCu -5'
5588 3' -68.4 NC_001806.1 + 41729 0.66 0.38343
Target:  5'- gCgGGCGCaaaCGCGGGCCacccgCGGGGGaccaGGa -3'
miRNA:   3'- -GgUCGCGgg-GUGCCCGG-----GCCCCCg---CU- -5'
5588 3' -68.4 NC_001806.1 + 86036 0.66 0.390298
Target:  5'- gCAGgGCCgCgggggggGCGGGCUCGuccccuGGGGCGGc -3'
miRNA:   3'- gGUCgCGGgG-------UGCCCGGGC------CCCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 113150 0.66 0.368458
Target:  5'- gCAGCGCcuggCCCACGGGCggguCCGauGGGucGCGGa -3'
miRNA:   3'- gGUCGCG----GGGUGCCCG----GGC--CCC--CGCU- -5'
5588 3' -68.4 NC_001806.1 + 146582 0.66 0.37142
Target:  5'- cCCAGCGCCCgACcccCCCcuccccacaaacacgGGGGGCGu -3'
miRNA:   3'- -GGUCGCGGGgUGcccGGG---------------CCCCCGCu -5'
5588 3' -68.4 NC_001806.1 + 4730 0.66 0.38343
Target:  5'- cCCGuucGCGgCCC-CGGGCCgGGGcccggucgccGGCGGc -3'
miRNA:   3'- -GGU---CGCgGGGuGCCCGGgCCC----------CCGCU- -5'
5588 3' -68.4 NC_001806.1 + 22906 0.66 0.36772
Target:  5'- gCCAGCcCCCCGCggccggaGGGaCCCGcGGGCc- -3'
miRNA:   3'- -GGUCGcGGGGUG-------CCC-GGGCcCCCGcu -5'
5588 3' -68.4 NC_001806.1 + 33811 0.66 0.375894
Target:  5'- gCCGGCGgguggaCUCGCGGGgggCCGGaGGGUGGa -3'
miRNA:   3'- -GGUCGCg-----GGGUGCCCg--GGCC-CCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.