miRNA display CGI


Results 1 - 20 of 201 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5588 3' -68.4 NC_001806.1 + 375 0.71 0.192836
Target:  5'- --cGCGCgCCCGCgggGGGCCCGGGcugccacaGGUGAa -3'
miRNA:   3'- gguCGCG-GGGUG---CCCGGGCCC--------CCGCU- -5'
5588 3' -68.4 NC_001806.1 + 733 0.66 0.368458
Target:  5'- cCCGGCGCguCCCGCGcuccCUCGGGGGgGu -3'
miRNA:   3'- -GGUCGCG--GGGUGCcc--GGGCCCCCgCu -5'
5588 3' -68.4 NC_001806.1 + 1454 0.66 0.378896
Target:  5'- gCAGgGCCCC-CGGGCcgucgucgucgCCgcgcagcaccagcggGGGGGCGu -3'
miRNA:   3'- gGUCgCGGGGuGCCCG-----------GG---------------CCCCCGCu -5'
5588 3' -68.4 NC_001806.1 + 1591 0.7 0.21115
Target:  5'- cCCAGCGCCacguaCACGGGCCgCaGcGGCGc -3'
miRNA:   3'- -GGUCGCGGg----GUGCCCGG-GcCcCCGCu -5'
5588 3' -68.4 NC_001806.1 + 1732 0.66 0.414559
Target:  5'- uCCAGCGCCggcagCAC-GGCCCGGcGGUa- -3'
miRNA:   3'- -GGUCGCGGg----GUGcCCGGGCCcCCGcu -5'
5588 3' -68.4 NC_001806.1 + 2017 0.7 0.230941
Target:  5'- gCC-GCGacaCCGCGGGCCCGucGGCGGg -3'
miRNA:   3'- -GGuCGCgg-GGUGCCCGGGCccCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 2175 0.67 0.325999
Target:  5'- cCCAGCGCCgaCACG---UCGGGGGCGc -3'
miRNA:   3'- -GGUCGCGGg-GUGCccgGGCCCCCGCu -5'
5588 3' -68.4 NC_001806.1 + 2414 0.69 0.246794
Target:  5'- gCGGCGCa--GCGGGCCCgaggcgcgcaGGGGGCc- -3'
miRNA:   3'- gGUCGCGgggUGCCCGGG----------CCCCCGcu -5'
5588 3' -68.4 NC_001806.1 + 2451 0.68 0.28728
Target:  5'- -aGGCgGCCCC-CGgcGGCCCcguGGGGGUGGg -3'
miRNA:   3'- ggUCG-CGGGGuGC--CCGGG---CCCCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 2498 0.75 0.102173
Target:  5'- gCCGcCGCCgCACGcGGCCUGGGcGGCGGg -3'
miRNA:   3'- -GGUcGCGGgGUGC-CCGGGCCC-CCGCU- -5'
5588 3' -68.4 NC_001806.1 + 2534 0.66 0.404272
Target:  5'- cCCGGCGCaCCgCGCggcgaucgaggccaGGGCCCGcGGGUc- -3'
miRNA:   3'- -GGUCGCG-GG-GUG--------------CCCGGGCcCCCGcu -5'
5588 3' -68.4 NC_001806.1 + 2673 0.73 0.136068
Target:  5'- gCgGGCGCCgCCGuguggcUGGGcCCCGGGGGCu- -3'
miRNA:   3'- -GgUCGCGG-GGU------GCCC-GGGCCCCCGcu -5'
5588 3' -68.4 NC_001806.1 + 2729 0.72 0.169543
Target:  5'- gUCGGgGCCCUcgGCGGGCCggcgcgacacggccaCGGGGcGCGGg -3'
miRNA:   3'- -GGUCgCGGGG--UGCCCGG---------------GCCCC-CGCU- -5'
5588 3' -68.4 NC_001806.1 + 2794 0.82 0.032072
Target:  5'- cCCGGgGCgCCGCGGGCUgggCGGGGGCGGg -3'
miRNA:   3'- -GGUCgCGgGGUGCCCGG---GCCCCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 2825 0.69 0.275204
Target:  5'- cUCGG-GCCCCGgGGGCgUggagGGGGGCGc -3'
miRNA:   3'- -GGUCgCGGGGUgCCCGgG----CCCCCGCu -5'
5588 3' -68.4 NC_001806.1 + 2971 0.67 0.353892
Target:  5'- gCUuGCGCCCCuccCGcGGCgCGGGgaGGCGGc -3'
miRNA:   3'- -GGuCGCGGGGu--GC-CCGgGCCC--CCGCU- -5'
5588 3' -68.4 NC_001806.1 + 3323 0.68 0.312676
Target:  5'- gCGGgG-CCCGCGGGUCCcuccggccgcgGGGGGCu- -3'
miRNA:   3'- gGUCgCgGGGUGCCCGGG-----------CCCCCGcu -5'
5588 3' -68.4 NC_001806.1 + 3481 0.69 0.245169
Target:  5'- gCGGCGCCCgGCGucgucgucggcgucGGCgUGGcGGGCGGc -3'
miRNA:   3'- gGUCGCGGGgUGC--------------CCGgGCC-CCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 3578 0.67 0.353892
Target:  5'- gCGGCGaggauCCCCGCGGcgccguaCCCGGcGGGCa- -3'
miRNA:   3'- gGUCGC-----GGGGUGCCc------GGGCC-CCCGcu -5'
5588 3' -68.4 NC_001806.1 + 4060 0.68 0.281191
Target:  5'- uCgGGCGCCCaCACGGcCgCCGGGGcGCc- -3'
miRNA:   3'- -GgUCGCGGG-GUGCCcG-GGCCCC-CGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.