miRNA display CGI


Results 1 - 20 of 201 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5588 3' -68.4 NC_001806.1 + 113385 0.66 0.414559
Target:  5'- gCGGCGUuccgggacgCCCG-GGGCCUggagcuGGGGGUGGg -3'
miRNA:   3'- gGUCGCG---------GGGUgCCCGGG------CCCCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 107939 0.76 0.078237
Target:  5'- aCCAGCGCgaCCugGGGCUCguGGGGGCc- -3'
miRNA:   3'- -GGUCGCGg-GGugCCCGGG--CCCCCGcu -5'
5588 3' -68.4 NC_001806.1 + 46170 0.76 0.088368
Target:  5'- aCCAcCGCCCCcCGGGCCCcccgaacccagcGGGuGGCGAc -3'
miRNA:   3'- -GGUcGCGGGGuGCCCGGG------------CCC-CCGCU- -5'
5588 3' -68.4 NC_001806.1 + 65458 0.75 0.095034
Target:  5'- gCC-GCgGCCCC-CGGGuCCUGGGGGCGc -3'
miRNA:   3'- -GGuCG-CGGGGuGCCC-GGGCCCCCGCu -5'
5588 3' -68.4 NC_001806.1 + 66842 0.75 0.095034
Target:  5'- gUguGCGCCgccuCCugGGGCCCGGGcacacGGCGGu -3'
miRNA:   3'- -GguCGCGG----GGugCCCGGGCCC-----CCGCU- -5'
5588 3' -68.4 NC_001806.1 + 25932 0.75 0.097359
Target:  5'- --cGCGCgCgGCGGGCgUGGGGGCGGg -3'
miRNA:   3'- gguCGCGgGgUGCCCGgGCCCCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 121420 0.75 0.097359
Target:  5'- gCuGCGCCU--UGGGCCCGGGGGCc- -3'
miRNA:   3'- gGuCGCGGGguGCCCGGGCCCCCGcu -5'
5588 3' -68.4 NC_001806.1 + 2498 0.75 0.102173
Target:  5'- gCCGcCGCCgCACGcGGCCUGGGcGGCGGg -3'
miRNA:   3'- -GGUcGCGGgGUGC-CCGGGCCC-CCGCU- -5'
5588 3' -68.4 NC_001806.1 + 30268 0.75 0.104663
Target:  5'- cCCGGC-CCCCGCGccccGGCCCccGGGGCGGa -3'
miRNA:   3'- -GGUCGcGGGGUGC----CCGGGc-CCCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 32984 0.77 0.074504
Target:  5'- gCCGGgGCCCCGggcCGGGCCgccaCGGGGGCc- -3'
miRNA:   3'- -GGUCgCGGGGU---GCCCGG----GCCCCCGcu -5'
5588 3' -68.4 NC_001806.1 + 4330 0.77 0.074504
Target:  5'- gCCAcCGCCgCGCGGGCCCGGcGGCGc -3'
miRNA:   3'- -GGUcGCGGgGUGCCCGGGCCcCCGCu -5'
5588 3' -68.4 NC_001806.1 + 20386 0.77 0.072702
Target:  5'- cCCGGCGUCCgGCGGGCgggaCCGGGGGg-- -3'
miRNA:   3'- -GGUCGCGGGgUGCCCG----GGCCCCCgcu -5'
5588 3' -68.4 NC_001806.1 + 2794 0.82 0.032072
Target:  5'- cCCGGgGCgCCGCGGGCUgggCGGGGGCGGg -3'
miRNA:   3'- -GGUCgCGgGGUGCCCGG---GCCCCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 26685 0.81 0.035447
Target:  5'- cCCGGC-CCCCACcgcccggcguGGGCCCgGGGGGCGGg -3'
miRNA:   3'- -GGUCGcGGGGUG----------CCCGGG-CCCCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 147671 0.81 0.038204
Target:  5'- gCCGGCuccGCCCCGgGGGCCggggcgCGGGGGCGGg -3'
miRNA:   3'- -GGUCG---CGGGGUgCCCGG------GCCCCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 6065 0.8 0.04548
Target:  5'- uCCGcGCcgGCCCCggggGCGGGCCCGGGcGGCGGg -3'
miRNA:   3'- -GGU-CG--CGGGG----UGCCCGGGCCC-CCGCU- -5'
5588 3' -68.4 NC_001806.1 + 119033 0.79 0.046624
Target:  5'- gCGGCGCUgCGCcuugcgugGGGCUCGGGGGCGAg -3'
miRNA:   3'- gGUCGCGGgGUG--------CCCGGGCCCCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 27230 0.79 0.051488
Target:  5'- gCCAGCccGCCCUcacaggGCGGGCCgccuCGGGGGCGGg -3'
miRNA:   3'- -GGUCG--CGGGG------UGCCCGG----GCCCCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 151534 0.78 0.062739
Target:  5'- aCGGCGCCCgugggccCGGGCggCCGGGGGCGGc -3'
miRNA:   3'- gGUCGCGGGgu-----GCCCG--GGCCCCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 55510 0.77 0.069223
Target:  5'- gCGGuCGCaCCaCACGGGCCCGGGGGg-- -3'
miRNA:   3'- gGUC-GCG-GG-GUGCCCGGGCCCCCgcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.