Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5589 | 5' | -55.7 | NC_001806.1 | + | 118789 | 1.11 | 0.002408 |
Target: 5'- cGGACUCGGGACGGCCGCAAACUUCCAg -3' miRNA: 3'- -CCUGAGCCCUGCCGGCGUUUGAAGGU- -5' |
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5589 | 5' | -55.7 | NC_001806.1 | + | 151448 | 0.84 | 0.149291 |
Target: 5'- gGGGCggcggCGGGGCGGCCGCGGGCgcgcUCCu -3' miRNA: 3'- -CCUGa----GCCCUGCCGGCGUUUGa---AGGu -5' |
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5589 | 5' | -55.7 | NC_001806.1 | + | 117984 | 0.75 | 0.447617 |
Target: 5'- aGGCUCGGGuguUGGCCGUGAACgcgggaUCCAc -3' miRNA: 3'- cCUGAGCCCu--GCCGGCGUUUGa-----AGGU- -5' |
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5589 | 5' | -55.7 | NC_001806.1 | + | 76322 | 0.75 | 0.484682 |
Target: 5'- cGACcCGGcGGCGGCCGCcGAGCUugUCCGg -3' miRNA: 3'- cCUGaGCC-CUGCCGGCG-UUUGA--AGGU- -5' |
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5589 | 5' | -55.7 | NC_001806.1 | + | 93596 | 0.74 | 0.523153 |
Target: 5'- gGGGCccCGGGAccggcauuugcCGGCCGCAAACgggcgUUCCAc -3' miRNA: 3'- -CCUGa-GCCCU-----------GCCGGCGUUUG-----AAGGU- -5' |
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5589 | 5' | -55.7 | NC_001806.1 | + | 64876 | 0.74 | 0.532958 |
Target: 5'- cGGGCcacggCGGGAuCGGCCGCAAGa--CCAg -3' miRNA: 3'- -CCUGa----GCCCU-GCCGGCGUUUgaaGGU- -5' |
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5589 | 5' | -55.7 | NC_001806.1 | + | 33753 | 0.74 | 0.532958 |
Target: 5'- cGGugUCGGcGGCGGCUGCGgcGGCUgcggcggCCGc -3' miRNA: 3'- -CCugAGCC-CUGCCGGCGU--UUGAa------GGU- -5' |
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5589 | 5' | -55.7 | NC_001806.1 | + | 135572 | 0.73 | 0.592951 |
Target: 5'- cGGACUCGGccgccagguCGGCCGCGcGCUgcuggcgcUCCAg -3' miRNA: 3'- -CCUGAGCCcu-------GCCGGCGUuUGA--------AGGU- -5' |
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5589 | 5' | -55.7 | NC_001806.1 | + | 147750 | 0.71 | 0.703351 |
Target: 5'- gGGGCgcgCGGGucccgacGCGGCCGCGGACgcggggggCCc -3' miRNA: 3'- -CCUGa--GCCC-------UGCCGGCGUUUGaa------GGu -5' |
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5589 | 5' | -55.7 | NC_001806.1 | + | 99772 | 0.71 | 0.704348 |
Target: 5'- aGGGC-CGGGugGGUCGUuguuGgUUCCGg -3' miRNA: 3'- -CCUGaGCCCugCCGGCGuu--UgAAGGU- -5' |
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5589 | 5' | -55.7 | NC_001806.1 | + | 88101 | 0.71 | 0.714284 |
Target: 5'- gGGAUUCGGGGaGGUCGCAGGaa-CCGa -3' miRNA: 3'- -CCUGAGCCCUgCCGGCGUUUgaaGGU- -5' |
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5589 | 5' | -55.7 | NC_001806.1 | + | 2653 | 0.71 | 0.714284 |
Target: 5'- aGGcCUCcagGGcGGCGGCCGCGGGCgccgCCGu -3' miRNA: 3'- -CCuGAG---CC-CUGCCGGCGUUUGaa--GGU- -5' |
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5589 | 5' | -55.7 | NC_001806.1 | + | 76556 | 0.7 | 0.73394 |
Target: 5'- gGGGCUgCGGGAggugcUGGCCGCGcGCgagcgCCGg -3' miRNA: 3'- -CCUGA-GCCCU-----GCCGGCGUuUGaa---GGU- -5' |
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5589 | 5' | -55.7 | NC_001806.1 | + | 44796 | 0.69 | 0.781393 |
Target: 5'- aGGGC-CGGGGgGGUCGCcaGGAUgUCCAg -3' miRNA: 3'- -CCUGaGCCCUgCCGGCG--UUUGaAGGU- -5' |
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5589 | 5' | -55.7 | NC_001806.1 | + | 73992 | 0.69 | 0.817028 |
Target: 5'- cGGC-CGGGGCGGCCccGCAGgggGCU-CCGc -3' miRNA: 3'- cCUGaGCCCUGCCGG--CGUU---UGAaGGU- -5' |
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5589 | 5' | -55.7 | NC_001806.1 | + | 42182 | 0.69 | 0.817028 |
Target: 5'- uGGuCUCGcGGAcguCGGCCGCAAuacgGCgcUCCAc -3' miRNA: 3'- -CCuGAGC-CCU---GCCGGCGUU----UGa-AGGU- -5' |
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5589 | 5' | -55.7 | NC_001806.1 | + | 30029 | 0.69 | 0.817028 |
Target: 5'- cGGAggCGGGGCGGCCGaggggcCGGACgggCCc -3' miRNA: 3'- -CCUgaGCCCUGCCGGC------GUUUGaa-GGu -5' |
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5589 | 5' | -55.7 | NC_001806.1 | + | 29464 | 0.69 | 0.817028 |
Target: 5'- aGGGC--GGGcACGGCCGUGGACUUUa- -3' miRNA: 3'- -CCUGagCCC-UGCCGGCGUUUGAAGgu -5' |
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5589 | 5' | -55.7 | NC_001806.1 | + | 15121 | 0.68 | 0.825541 |
Target: 5'- gGGACUaCGGGACGGuuGgGuuugUCCu -3' miRNA: 3'- -CCUGA-GCCCUGCCggCgUuugaAGGu -5' |
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5589 | 5' | -55.7 | NC_001806.1 | + | 86054 | 0.68 | 0.830567 |
Target: 5'- cGGGCUCguccccuGGGGCGGCgGCGucuagcucgcggagGGCggCCAg -3' miRNA: 3'- -CCUGAG-------CCCUGCCGgCGU--------------UUGaaGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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