miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5589 5' -55.7 NC_001806.1 + 2598 0.66 0.923625
Target:  5'- gGGACggggaacagCGGGugGuCCGUGAGCUcggCCAc -3'
miRNA:   3'- -CCUGa--------GCCCugCcGGCGUUUGAa--GGU- -5'
5589 5' -55.7 NC_001806.1 + 2653 0.71 0.714284
Target:  5'- aGGcCUCcagGGcGGCGGCCGCGGGCgccgCCGu -3'
miRNA:   3'- -CCuGAG---CC-CUGCCGGCGUUUGaa--GGU- -5'
5589 5' -55.7 NC_001806.1 + 2791 0.66 0.934022
Target:  5'- cGGCcCGGGGC-GCCGCGGGCUgggCgGg -3'
miRNA:   3'- cCUGaGCCCUGcCGGCGUUUGAa--GgU- -5'
5589 5' -55.7 NC_001806.1 + 2854 0.68 0.865357
Target:  5'- cGGGCgCGGGGagggGGgCGCGGGCgUCCGa -3'
miRNA:   3'- -CCUGaGCCCUg---CCgGCGUUUGaAGGU- -5'
5589 5' -55.7 NC_001806.1 + 2994 0.68 0.840423
Target:  5'- gGGAggCGGcGGCGGCCGCcAGCgcgucggcggcgUCCGg -3'
miRNA:   3'- -CCUgaGCC-CUGCCGGCGuUUGa-----------AGGU- -5'
5589 5' -55.7 NC_001806.1 + 3365 0.68 0.848431
Target:  5'- cGGGCcccggccagcccCGGGACGGCCGcCAggUcgCCGu -3'
miRNA:   3'- -CCUGa-----------GCCCUGCCGGC-GUuuGaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 4057 0.67 0.871995
Target:  5'- -aGCUCGGGcgcccacACGGCCGCcgGGGCgcCCGa -3'
miRNA:   3'- ccUGAGCCC-------UGCCGGCG--UUUGaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 5081 0.67 0.893519
Target:  5'- uGGGCUCgGGGugGGCgGCGGc---CCGu -3'
miRNA:   3'- -CCUGAG-CCCugCCGgCGUUugaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 5319 0.67 0.900004
Target:  5'- aGGACa-GGGACGGCCGaucccccuccCGcGCUUCg- -3'
miRNA:   3'- -CCUGagCCCUGCCGGC----------GUuUGAAGgu -5'
5589 5' -55.7 NC_001806.1 + 5766 0.67 0.893519
Target:  5'- cGGGCagGGGGCGGggcCCGgGccccGACUUCCc -3'
miRNA:   3'- -CCUGagCCCUGCC---GGCgU----UUGAAGGu -5'
5589 5' -55.7 NC_001806.1 + 10630 0.66 0.934022
Target:  5'- aGACUCcGGuuaaccACGGCCGCGcGCUccugCCAc -3'
miRNA:   3'- cCUGAGcCC------UGCCGGCGUuUGAa---GGU- -5'
5589 5' -55.7 NC_001806.1 + 15121 0.68 0.825541
Target:  5'- gGGACUaCGGGACGGuuGgGuuugUCCu -3'
miRNA:   3'- -CCUGA-GCCCUGCCggCgUuugaAGGu -5'
5589 5' -55.7 NC_001806.1 + 21611 0.66 0.928942
Target:  5'- aGACgUCGucACGGCCGguGGCggCCAu -3'
miRNA:   3'- cCUG-AGCccUGCCGGCguUUGaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 22169 0.67 0.871995
Target:  5'- aGGcCUCGGGcgccccgGCGGCCGUguGGGCgcCCGa -3'
miRNA:   3'- -CCuGAGCCC-------UGCCGGCG--UUUGaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 23946 0.66 0.912283
Target:  5'- gGGGCcUGGGGgGGCCGCcGGaguggUCCGc -3'
miRNA:   3'- -CCUGaGCCCUgCCGGCGuUUga---AGGU- -5'
5589 5' -55.7 NC_001806.1 + 24891 0.67 0.879874
Target:  5'- aGGuGCUgGGGGCGGagGCGGGCUUggCCAc -3'
miRNA:   3'- -CC-UGAgCCCUGCCggCGUUUGAA--GGU- -5'
5589 5' -55.7 NC_001806.1 + 29464 0.69 0.817028
Target:  5'- aGGGC--GGGcACGGCCGUGGACUUUa- -3'
miRNA:   3'- -CCUGagCCC-UGCCGGCGUUUGAAGgu -5'
5589 5' -55.7 NC_001806.1 + 30029 0.69 0.817028
Target:  5'- cGGAggCGGGGCGGCCGaggggcCGGACgggCCc -3'
miRNA:   3'- -CCUgaGCCCUGCCGGC------GUUUGaa-GGu -5'
5589 5' -55.7 NC_001806.1 + 33753 0.74 0.532958
Target:  5'- cGGugUCGGcGGCGGCUGCGgcGGCUgcggcggCCGc -3'
miRNA:   3'- -CCugAGCC-CUGCCGGCGU--UUGAa------GGU- -5'
5589 5' -55.7 NC_001806.1 + 37759 0.66 0.928942
Target:  5'- uGGugUCGGcGGCGGgCGCcuuucGCU-CCGg -3'
miRNA:   3'- -CCugAGCC-CUGCCgGCGuu---UGAaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.