miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5589 5' -55.7 NC_001806.1 + 57744 0.66 0.934022
Target:  5'- cGGGCgucuggagcggCGGGACgGGCCGCcgucccgUCCGc -3'
miRNA:   3'- -CCUGa----------GCCCUG-CCGGCGuuuga--AGGU- -5'
5589 5' -55.7 NC_001806.1 + 76556 0.7 0.73394
Target:  5'- gGGGCUgCGGGAggugcUGGCCGCGcGCgagcgCCGg -3'
miRNA:   3'- -CCUGA-GCCCU-----GCCGGCGUuUGaa---GGU- -5'
5589 5' -55.7 NC_001806.1 + 44796 0.69 0.781393
Target:  5'- aGGGC-CGGGGgGGUCGCcaGGAUgUCCAg -3'
miRNA:   3'- -CCUGaGCCCUgCCGGCG--UUUGaAGGU- -5'
5589 5' -55.7 NC_001806.1 + 29464 0.69 0.817028
Target:  5'- aGGGC--GGGcACGGCCGUGGACUUUa- -3'
miRNA:   3'- -CCUGagCCC-UGCCGGCGUUUGAAGgu -5'
5589 5' -55.7 NC_001806.1 + 30029 0.69 0.817028
Target:  5'- cGGAggCGGGGCGGCCGaggggcCGGACgggCCc -3'
miRNA:   3'- -CCUgaGCCCUGCCGGC------GUUUGaa-GGu -5'
5589 5' -55.7 NC_001806.1 + 42182 0.69 0.817028
Target:  5'- uGGuCUCGcGGAcguCGGCCGCAAuacgGCgcUCCAc -3'
miRNA:   3'- -CCuGAGC-CCU---GCCGGCGUU----UGa-AGGU- -5'
5589 5' -55.7 NC_001806.1 + 73992 0.69 0.817028
Target:  5'- cGGC-CGGGGCGGCCccGCAGgggGCU-CCGc -3'
miRNA:   3'- cCUGaGCCCUGCCGG--CGUU---UGAaGGU- -5'
5589 5' -55.7 NC_001806.1 + 15121 0.68 0.825541
Target:  5'- gGGACUaCGGGACGGuuGgGuuugUCCu -3'
miRNA:   3'- -CCUGA-GCCCUGCCggCgUuugaAGGu -5'
5589 5' -55.7 NC_001806.1 + 86054 0.68 0.830567
Target:  5'- cGGGCUCguccccuGGGGCGGCgGCGucuagcucgcggagGGCggCCAg -3'
miRNA:   3'- -CCUGAG-------CCCUGCCGgCGU--------------UUGaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 88101 0.71 0.714284
Target:  5'- gGGAUUCGGGGaGGUCGCAGGaa-CCGa -3'
miRNA:   3'- -CCUGAGCCCUgCCGGCGUUUgaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 2653 0.71 0.714284
Target:  5'- aGGcCUCcagGGcGGCGGCCGCGGGCgccgCCGu -3'
miRNA:   3'- -CCuGAG---CC-CUGCCGGCGUUUGaa--GGU- -5'
5589 5' -55.7 NC_001806.1 + 99772 0.71 0.704348
Target:  5'- aGGGC-CGGGugGGUCGUuguuGgUUCCGg -3'
miRNA:   3'- -CCUGaGCCCugCCGGCGuu--UgAAGGU- -5'
5589 5' -55.7 NC_001806.1 + 151448 0.84 0.149291
Target:  5'- gGGGCggcggCGGGGCGGCCGCGGGCgcgcUCCu -3'
miRNA:   3'- -CCUGa----GCCCUGCCGGCGUUUGa---AGGu -5'
5589 5' -55.7 NC_001806.1 + 117984 0.75 0.447617
Target:  5'- aGGCUCGGGuguUGGCCGUGAACgcgggaUCCAc -3'
miRNA:   3'- cCUGAGCCCu--GCCGGCGUUUGa-----AGGU- -5'
5589 5' -55.7 NC_001806.1 + 76322 0.75 0.484682
Target:  5'- cGACcCGGcGGCGGCCGCcGAGCUugUCCGg -3'
miRNA:   3'- cCUGaGCC-CUGCCGGCG-UUUGA--AGGU- -5'
5589 5' -55.7 NC_001806.1 + 93596 0.74 0.523153
Target:  5'- gGGGCccCGGGAccggcauuugcCGGCCGCAAACgggcgUUCCAc -3'
miRNA:   3'- -CCUGa-GCCCU-----------GCCGGCGUUUG-----AAGGU- -5'
5589 5' -55.7 NC_001806.1 + 33753 0.74 0.532958
Target:  5'- cGGugUCGGcGGCGGCUGCGgcGGCUgcggcggCCGc -3'
miRNA:   3'- -CCugAGCC-CUGCCGGCGU--UUGAa------GGU- -5'
5589 5' -55.7 NC_001806.1 + 64876 0.74 0.532958
Target:  5'- cGGGCcacggCGGGAuCGGCCGCAAGa--CCAg -3'
miRNA:   3'- -CCUGa----GCCCU-GCCGGCGUUUgaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 135572 0.73 0.592951
Target:  5'- cGGACUCGGccgccagguCGGCCGCGcGCUgcuggcgcUCCAg -3'
miRNA:   3'- -CCUGAGCCcu-------GCCGGCGUuUGA--------AGGU- -5'
5589 5' -55.7 NC_001806.1 + 147750 0.71 0.703351
Target:  5'- gGGGCgcgCGGGucccgacGCGGCCGCGGACgcggggggCCc -3'
miRNA:   3'- -CCUGa--GCCC-------UGCCGGCGUUUGaa------GGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.