miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5591 3' -57.8 NC_001806.1 + 150077 0.66 0.84204
Target:  5'- -gGCCGCGCGUcccaGGGgAgGCAgGCC-Ca -3'
miRNA:   3'- cgCGGCGCGUA----UUCgUgCGUgCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 132675 0.66 0.84204
Target:  5'- aCGCCGCGCuccUGGGgGC-CugGCC-Cg -3'
miRNA:   3'- cGCGGCGCGu--AUUCgUGcGugCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 1332 0.66 0.84204
Target:  5'- cCGCCGCGgGggcguGGCcaaGCcCGCCUCc -3'
miRNA:   3'- cGCGGCGCgUau---UCGug-CGuGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 119135 0.66 0.84204
Target:  5'- -aGCaCGCGCAU---CAUGCGCGUCUg -3'
miRNA:   3'- cgCG-GCGCGUAuucGUGCGUGCGGAg -5'
5591 3' -57.8 NC_001806.1 + 108536 0.66 0.84204
Target:  5'- gGCgGCC-CGCGUGcGGCugGCcGCGCC-Cg -3'
miRNA:   3'- -CG-CGGcGCGUAU-UCGugCG-UGCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 9826 0.66 0.84204
Target:  5'- cGCGCCGCGCugugggagGGGCuguuccaccaccGCGUuccgguacuGCGCCg- -3'
miRNA:   3'- -CGCGGCGCGua------UUCG------------UGCG---------UGCGGag -5'
5591 3' -57.8 NC_001806.1 + 2145 0.66 0.84204
Target:  5'- cGCGUgGacaGCAgcAGCACGCccuguGCGCC-Ca -3'
miRNA:   3'- -CGCGgCg--CGUauUCGUGCG-----UGCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 24456 0.66 0.833882
Target:  5'- uGCGCaCGCGCuucGGCcCGgaCACGCCg- -3'
miRNA:   3'- -CGCG-GCGCGuauUCGuGC--GUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 105059 0.66 0.833882
Target:  5'- uCGCCGCGUuuAUGGGC-UGCuuGCCa- -3'
miRNA:   3'- cGCGGCGCG--UAUUCGuGCGugCGGag -5'
5591 3' -57.8 NC_001806.1 + 42569 0.66 0.833882
Target:  5'- -gGCCGCGUugucccAGGgACGUGCGCCcCa -3'
miRNA:   3'- cgCGGCGCGua----UUCgUGCGUGCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 82604 0.66 0.833882
Target:  5'- cGUcCCGCcCAacAGCACGCGCGUCa- -3'
miRNA:   3'- -CGcGGCGcGUauUCGUGCGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 1477 0.66 0.833882
Target:  5'- uCGCCGCGCAgcaccAGCGgGgGgGCgUCg -3'
miRNA:   3'- cGCGGCGCGUau---UCGUgCgUgCGgAG- -5'
5591 3' -57.8 NC_001806.1 + 3263 0.66 0.833056
Target:  5'- cGCaGCuCGCGCAgccacGCGCGCaggcgggGCGCgUCg -3'
miRNA:   3'- -CG-CG-GCGCGUauu--CGUGCG-------UGCGgAG- -5'
5591 3' -57.8 NC_001806.1 + 86709 0.66 0.830567
Target:  5'- cGUGUCcccguagaugauGCGCAUGgaauagggcccgggGGCGCGCAugucggcCGCCUCc -3'
miRNA:   3'- -CGCGG------------CGCGUAU--------------UCGUGCGU-------GCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 20187 0.66 0.825542
Target:  5'- gGgGCCgGCGCGgagucGGGCACG-GCGCCa- -3'
miRNA:   3'- -CgCGG-CGCGUa----UUCGUGCgUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 23080 0.66 0.825542
Target:  5'- cCGCCGUGCgcgccGUGAGCcUGguCGCCg- -3'
miRNA:   3'- cGCGGCGCG-----UAUUCGuGCguGCGGag -5'
5591 3' -57.8 NC_001806.1 + 131888 0.66 0.825542
Target:  5'- cGCGCCGCGacgacGC-CGgC-CGCCUCc -3'
miRNA:   3'- -CGCGGCGCguauuCGuGC-GuGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 21788 0.66 0.817028
Target:  5'- aGCGCgGCGCcgGcAGCccccggGCGgACGCCg- -3'
miRNA:   3'- -CGCGgCGCGuaU-UCG------UGCgUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 1935 0.66 0.817028
Target:  5'- cGUGCgGCGCAgguccCGCGC-CGCCg- -3'
miRNA:   3'- -CGCGgCGCGUauuc-GUGCGuGCGGag -5'
5591 3' -57.8 NC_001806.1 + 10721 0.66 0.817028
Target:  5'- uCGCCaGCGgGaccgGAGCGCGCAUGCa-- -3'
miRNA:   3'- cGCGG-CGCgUa---UUCGUGCGUGCGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.