miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5591 3' -57.8 NC_001806.1 + 50003 0.7 0.572771
Target:  5'- cGCGCCuucaCGCGgAGGCGCGCGgGUCUg -3'
miRNA:   3'- -CGCGGc---GCGUaUUCGUGCGUgCGGAg -5'
5591 3' -57.8 NC_001806.1 + 74708 0.7 0.572771
Target:  5'- cGUGcCCGUuuGCGgGAGCGCGCGCGCUc- -3'
miRNA:   3'- -CGC-GGCG--CGUaUUCGUGCGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 56856 0.7 0.576795
Target:  5'- gGCgGCCGCGgcgggcccaccgaucCAccaGAGCGCGCGCuGCCUCc -3'
miRNA:   3'- -CG-CGGCGC---------------GUa--UUCGUGCGUG-CGGAG- -5'
5591 3' -57.8 NC_001806.1 + 95270 0.7 0.582844
Target:  5'- gGCGCUGCGUcgcguGCugGCGCGCa-- -3'
miRNA:   3'- -CGCGGCGCGuauu-CGugCGUGCGgag -5'
5591 3' -57.8 NC_001806.1 + 49775 0.7 0.592951
Target:  5'- aGCGCguucggguuauCGCGCGUGGGgguCAUGCAcuuCGCCUCc -3'
miRNA:   3'- -CGCG-----------GCGCGUAUUC---GUGCGU---GCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 84090 0.7 0.603087
Target:  5'- cGCGCUGcCGCGgAGGCcCGuCGCGCCa- -3'
miRNA:   3'- -CGCGGC-GCGUaUUCGuGC-GUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 50892 0.7 0.603087
Target:  5'- gGCGgacuCCGCGCGgccgcgGAGCACGUGgaucugcgcccCGCCUCc -3'
miRNA:   3'- -CGC----GGCGCGUa-----UUCGUGCGU-----------GCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 79678 0.7 0.613244
Target:  5'- cGCGCgCGCGCcgAcaccgccgGGCACGCucccuggcgcGCGCCa- -3'
miRNA:   3'- -CGCG-GCGCGuaU--------UCGUGCG----------UGCGGag -5'
5591 3' -57.8 NC_001806.1 + 3009 0.7 0.613244
Target:  5'- cCGCCaGCGCGUcGGCggcguccgguGCGCugGCCg- -3'
miRNA:   3'- cGCGG-CGCGUAuUCG----------UGCGugCGGag -5'
5591 3' -57.8 NC_001806.1 + 95720 0.7 0.620363
Target:  5'- gGCGCCGgGCGUGuucGaCGCGCaccgguucaugcgaGCGUCUCu -3'
miRNA:   3'- -CGCGGCgCGUAUu--C-GUGCG--------------UGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 92439 0.7 0.622398
Target:  5'- -aGCCGCGUGUuguucgcGGGCGCGaGCGCCa- -3'
miRNA:   3'- cgCGGCGCGUA-------UUCGUGCgUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 1785 0.7 0.623415
Target:  5'- cGUGuCCGgGCcgAAGCGCGUGCGCacgCg -3'
miRNA:   3'- -CGC-GGCgCGuaUUCGUGCGUGCGga-G- -5'
5591 3' -57.8 NC_001806.1 + 104336 0.69 0.633593
Target:  5'- aGCGCCuuGUAgAAGCGCGUAUgGCUUCg -3'
miRNA:   3'- -CGCGGcgCGUaUUCGUGCGUG-CGGAG- -5'
5591 3' -57.8 NC_001806.1 + 42518 0.69 0.64377
Target:  5'- uGCGguaCGCgGCA--AGCACGCGCaCCUCg -3'
miRNA:   3'- -CGCg--GCG-CGUauUCGUGCGUGcGGAG- -5'
5591 3' -57.8 NC_001806.1 + 98486 0.69 0.64377
Target:  5'- aGCGCCGCaacCAgcuGCACGaccuGCGCUUCg -3'
miRNA:   3'- -CGCGGCGc--GUauuCGUGCg---UGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 76574 0.69 0.653937
Target:  5'- -gGCCGCGCGcGAGCGC-CGgGCC-Ca -3'
miRNA:   3'- cgCGGCGCGUaUUCGUGcGUgCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 26972 0.69 0.653937
Target:  5'- cGCGCCGCGgcuCGUGGGCcCGCGagcggGCCg- -3'
miRNA:   3'- -CGCGGCGC---GUAUUCGuGCGUg----CGGag -5'
5591 3' -57.8 NC_001806.1 + 30383 0.69 0.653937
Target:  5'- uGUGCCggGCGCGUGcgacGGUgGCGCGCGgCUCg -3'
miRNA:   3'- -CGCGG--CGCGUAU----UCG-UGCGUGCgGAG- -5'
5591 3' -57.8 NC_001806.1 + 75483 0.69 0.653937
Target:  5'- cGCGaCGCGCGcgaccaccGGCGCGCGggaaaGCCUCg -3'
miRNA:   3'- -CGCgGCGCGUau------UCGUGCGUg----CGGAG- -5'
5591 3' -57.8 NC_001806.1 + 3595 0.69 0.664088
Target:  5'- gGCGCCGUacccgGCG--GGCAC-CGCGCgCUCg -3'
miRNA:   3'- -CGCGGCG-----CGUauUCGUGcGUGCG-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.