miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5594 5' -57.6 NC_001806.1 + 98537 0.69 0.676415
Target:  5'- uCCACGCcga-CGCCAACGCCgCCa-- -3'
miRNA:   3'- -GGUGCGaaggGCGGUUGUGGgGGaag -5'
5594 5' -57.6 NC_001806.1 + 56810 0.69 0.685415
Target:  5'- cCCugGCggUggucgcccccgggCCCGCCAACACCgCCg-- -3'
miRNA:   3'- -GGugCGa-A-------------GGGCGGUUGUGGgGGaag -5'
5594 5' -57.6 NC_001806.1 + 72125 0.69 0.685415
Target:  5'- aCACGUUcUUCGCCGgcccgugggcccuGCGCCCCCUgUCg -3'
miRNA:   3'- gGUGCGAaGGGCGGU-------------UGUGGGGGA-AG- -5'
5594 5' -57.6 NC_001806.1 + 146346 0.69 0.685415
Target:  5'- cCCACGCa-CCC-CCAcucccacGCACCCCCa-- -3'
miRNA:   3'- -GGUGCGaaGGGcGGU-------UGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 146314 0.69 0.685415
Target:  5'- cCCACGCa-CCC-CCAcucccacGCACCCCCa-- -3'
miRNA:   3'- -GGUGCGaaGGGcGGU-------UGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 146282 0.69 0.685415
Target:  5'- cCCACGCa-CCC-CCAcucccacGCACCCCCa-- -3'
miRNA:   3'- -GGUGCGaaGGGcGGU-------UGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 146250 0.69 0.685415
Target:  5'- cCCACGCa-CCC-CCAcucccacGCACCCCCa-- -3'
miRNA:   3'- -GGUGCGaaGGGcGGU-------UGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 100125 0.69 0.686413
Target:  5'- gCCugGCggUCCgCgGCUAugGCCCCCa-- -3'
miRNA:   3'- -GGugCGa-AGG-G-CGGUugUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 33313 0.69 0.686413
Target:  5'- cCgGCGCUuagggggaggaUgUCGCCGACGCCCCUUg- -3'
miRNA:   3'- -GgUGCGA-----------AgGGCGGUUGUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 151703 0.69 0.686413
Target:  5'- cCCGgGCUgCCCGCCGcCACCgCUUUa -3'
miRNA:   3'- -GGUgCGAaGGGCGGUuGUGGgGGAAg -5'
5594 5' -57.6 NC_001806.1 + 78909 0.69 0.696367
Target:  5'- uCCGCGCUcaUCGCCgAGCGgCCCCUc- -3'
miRNA:   3'- -GGUGCGAagGGCGG-UUGUgGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 128851 0.69 0.706269
Target:  5'- aCCACGCcgUCCgCGCCccgguCAUgCCUUUCg -3'
miRNA:   3'- -GGUGCGa-AGG-GCGGuu---GUGgGGGAAG- -5'
5594 5' -57.6 NC_001806.1 + 105001 0.69 0.706269
Target:  5'- gCCugGCcaaaCGCCAGCGCCCCg--- -3'
miRNA:   3'- -GGugCGaaggGCGGUUGUGGGGgaag -5'
5594 5' -57.6 NC_001806.1 + 92864 0.69 0.706269
Target:  5'- aUCAuCGCggggUCCCGCCGuC-CCCCCa-- -3'
miRNA:   3'- -GGU-GCGa---AGGGCGGUuGuGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 92665 0.69 0.716109
Target:  5'- aCCA-GCUUCCCGCCcg-GCUCCUgUCg -3'
miRNA:   3'- -GGUgCGAAGGGCGGuugUGGGGGaAG- -5'
5594 5' -57.6 NC_001806.1 + 79407 0.69 0.716109
Target:  5'- cCCGCGCcccUCCuUGCCccgGAC-CCCCUUUCg -3'
miRNA:   3'- -GGUGCGa--AGG-GCGG---UUGuGGGGGAAG- -5'
5594 5' -57.6 NC_001806.1 + 29835 0.69 0.720027
Target:  5'- cUCACGCagCCCcccaGCCGgccgcggcucggacaGCGCCCCCcUCg -3'
miRNA:   3'- -GGUGCGaaGGG----CGGU---------------UGUGGGGGaAG- -5'
5594 5' -57.6 NC_001806.1 + 79577 0.69 0.720027
Target:  5'- cCgGCGCUUgCCGuccccccaaaguuccCCGGCGCCCCCc-- -3'
miRNA:   3'- -GgUGCGAAgGGC---------------GGUUGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 118582 0.68 0.724907
Target:  5'- cCCACGCccUUCCCGCgGACucgggggACCCgCaUCg -3'
miRNA:   3'- -GGUGCG--AAGGGCGgUUG-------UGGGgGaAG- -5'
5594 5' -57.6 NC_001806.1 + 79681 0.68 0.72588
Target:  5'- gCGCGCgccgacaCCGCCGggcACGCUCCCUg- -3'
miRNA:   3'- gGUGCGaag----GGCGGU---UGUGGGGGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.