miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5594 5' -57.6 NC_001806.1 + 29761 0.68 0.735573
Target:  5'- gCC-CGCccCCCGCCgGACGCCCCg--- -3'
miRNA:   3'- -GGuGCGaaGGGCGG-UUGUGGGGgaag -5'
5594 5' -57.6 NC_001806.1 + 29791 0.72 0.516839
Target:  5'- cCCACGCagaggCgCCGCC-GCGCCCCCc-- -3'
miRNA:   3'- -GGUGCGaa---G-GGCGGuUGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 29835 0.69 0.720027
Target:  5'- cUCACGCagCCCcccaGCCGgccgcggcucggacaGCGCCCCCcUCg -3'
miRNA:   3'- -GGUGCGaaGGG----CGGU---------------UGUGGGGGaAG- -5'
5594 5' -57.6 NC_001806.1 + 30162 0.66 0.85047
Target:  5'- gCCAgGCUccgcccCCCGCCccgGGC-CCCCCgcgUCc -3'
miRNA:   3'- -GGUgCGAa-----GGGCGG---UUGuGGGGGa--AG- -5'
5594 5' -57.6 NC_001806.1 + 30202 0.68 0.735573
Target:  5'- gCCGCGUcgggaCCCGC--GCGCCCCCg-- -3'
miRNA:   3'- -GGUGCGaa---GGGCGguUGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 31159 0.68 0.764091
Target:  5'- aCCACGUgaugcccCCCGaguacCCGACgGCCCCCgcgUCg -3'
miRNA:   3'- -GGUGCGaa-----GGGC-----GGUUG-UGGGGGa--AG- -5'
5594 5' -57.6 NC_001806.1 + 33313 0.69 0.686413
Target:  5'- cCgGCGCUuagggggaggaUgUCGCCGACGCCCCUUg- -3'
miRNA:   3'- -GgUGCGA-----------AgGGCGGUUGUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 34689 0.76 0.33558
Target:  5'- cCCGCGCaccCCCGCCcACAUCCCCc-- -3'
miRNA:   3'- -GGUGCGaa-GGGCGGuUGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 34829 0.68 0.745178
Target:  5'- uCCGCgGCcccUCCCGgCAgccACGCCCCCa-- -3'
miRNA:   3'- -GGUG-CGa--AGGGCgGU---UGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 43145 0.72 0.516839
Target:  5'- cCCGCGgUUCCCGUCuucCugCCCCa-- -3'
miRNA:   3'- -GGUGCgAAGGGCGGuu-GugGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 43335 0.7 0.660348
Target:  5'- aCGCGCUacuUCCCGCCcccaucacgcucgauGACGCCCUg--- -3'
miRNA:   3'- gGUGCGA---AGGGCGG---------------UUGUGGGGgaag -5'
5594 5' -57.6 NC_001806.1 + 44682 0.71 0.575808
Target:  5'- gUCACGCUUggggCCC-CgAGCGCCCCCUcCa -3'
miRNA:   3'- -GGUGCGAA----GGGcGgUUGUGGGGGAaG- -5'
5594 5' -57.6 NC_001806.1 + 45929 0.68 0.72588
Target:  5'- uCCGC-CUgacaccUCCCGCCGugGCgCCCUa- -3'
miRNA:   3'- -GGUGcGA------AGGGCGGUugUGgGGGAag -5'
5594 5' -57.6 NC_001806.1 + 47179 0.67 0.809227
Target:  5'- aCgGCGCU--UCGCCAcCGCCCCCc-- -3'
miRNA:   3'- -GgUGCGAagGGCGGUuGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 47292 0.68 0.77338
Target:  5'- cCCAUGCccgUCCCccCCGcCGCCCUCUUUa -3'
miRNA:   3'- -GGUGCGa--AGGGc-GGUuGUGGGGGAAG- -5'
5594 5' -57.6 NC_001806.1 + 47544 0.68 0.735573
Target:  5'- cCUACGCUUCCgGCCAcccgcgACGgCCUCg-- -3'
miRNA:   3'- -GGUGCGAAGGgCGGU------UGUgGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 49344 0.7 0.656321
Target:  5'- cCCAuCGCcgagcgUCCCGgCAGCGCCCCg--- -3'
miRNA:   3'- -GGU-GCGa-----AGGGCgGUUGUGGGGgaag -5'
5594 5' -57.6 NC_001806.1 + 53037 0.73 0.46962
Target:  5'- cCCACGCcgccucggCCCGCgAacggcACGCCCCCUa- -3'
miRNA:   3'- -GGUGCGaa------GGGCGgU-----UGUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 53423 0.66 0.84969
Target:  5'- cCCGUGCUg-CCGUCGcuagaccACGCCCCUUUCc -3'
miRNA:   3'- -GGUGCGAagGGCGGU-------UGUGGGGGAAG- -5'
5594 5' -57.6 NC_001806.1 + 56810 0.69 0.685415
Target:  5'- cCCugGCggUggucgcccccgggCCCGCCAACACCgCCg-- -3'
miRNA:   3'- -GGugCGa-A-------------GGGCGGUUGUGGgGGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.