miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5594 5' -57.6 NC_001806.1 + 152046 0.67 0.800479
Target:  5'- gCACGCcgCCCGgaCCGcCGCCCgCCUUUu -3'
miRNA:   3'- gGUGCGaaGGGC--GGUuGUGGG-GGAAG- -5'
5594 5' -57.6 NC_001806.1 + 152003 0.66 0.858169
Target:  5'- cCCcCGC-UCCCGCgGcccCGCCCCCc-- -3'
miRNA:   3'- -GGuGCGaAGGGCGgUu--GUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 151703 0.69 0.686413
Target:  5'- cCCGgGCUgCCCGCCGcCACCgCUUUa -3'
miRNA:   3'- -GGUgCGAaGGGCGGUuGUGGgGGAAg -5'
5594 5' -57.6 NC_001806.1 + 150678 0.72 0.516839
Target:  5'- gCCGCGCUggcggCCGCCGAUggccagucccGCCCCCg-- -3'
miRNA:   3'- -GGUGCGAag---GGCGGUUG----------UGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 146882 0.66 0.845758
Target:  5'- gCCAUGUUUCCCGucugguccaccaggaCCAcguACGCCCCg--- -3'
miRNA:   3'- -GGUGCGAAGGGC---------------GGU---UGUGGGGgaag -5'
5594 5' -57.6 NC_001806.1 + 146637 0.66 0.858169
Target:  5'- cCCuCGU--CCCggGUCGACGCCCCCUg- -3'
miRNA:   3'- -GGuGCGaaGGG--CGGUUGUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 146346 0.69 0.685415
Target:  5'- cCCACGCa-CCC-CCAcucccacGCACCCCCa-- -3'
miRNA:   3'- -GGUGCGaaGGGcGGU-------UGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 146314 0.69 0.685415
Target:  5'- cCCACGCa-CCC-CCAcucccacGCACCCCCa-- -3'
miRNA:   3'- -GGUGCGaaGGGcGGU-------UGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 146282 0.69 0.685415
Target:  5'- cCCACGCa-CCC-CCAcucccacGCACCCCCa-- -3'
miRNA:   3'- -GGUGCGaaGGGcGGU-------UGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 146250 0.69 0.685415
Target:  5'- cCCACGCa-CCC-CCAcucccacGCACCCCCa-- -3'
miRNA:   3'- -GGUGCGaaGGGcGGU-------UGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 145992 0.68 0.764091
Target:  5'- -gGCGCcccgUCCCGCCccgcCACCCCUc-- -3'
miRNA:   3'- ggUGCGa---AGGGCGGuu--GUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 145197 0.67 0.782547
Target:  5'- gCCGCGUUUCCagGUagguuaGACACCUgCUUCu -3'
miRNA:   3'- -GGUGCGAAGGg-CGg-----UUGUGGGgGAAG- -5'
5594 5' -57.6 NC_001806.1 + 143958 0.71 0.555933
Target:  5'- cCCACGCc-CCCGCCc-CugCCCCggCg -3'
miRNA:   3'- -GGUGCGaaGGGCGGuuGugGGGGaaG- -5'
5594 5' -57.6 NC_001806.1 + 143916 0.66 0.833685
Target:  5'- cCCACGCccCCacugaGCCcggucgaucgacgAGCACCCCCg-- -3'
miRNA:   3'- -GGUGCGaaGGg----CGG-------------UUGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 143186 0.66 0.834502
Target:  5'- cCCGaacCGC--CCCGCCGcuuuGC-CCCCCUUUg -3'
miRNA:   3'- -GGU---GCGaaGGGCGGU----UGuGGGGGAAG- -5'
5594 5' -57.6 NC_001806.1 + 143158 0.71 0.595838
Target:  5'- aCUugGUUUCCCGCCccCcCCCCCc-- -3'
miRNA:   3'- -GGugCGAAGGGCGGuuGuGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 142881 0.7 0.636153
Target:  5'- cCCGCGCUUUUCGUUGguuuauAUACCCCCUc- -3'
miRNA:   3'- -GGUGCGAAGGGCGGU------UGUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 140694 0.7 0.646243
Target:  5'- cCCGCGUg-CCgCGCUggAACGCCCCCgUCu -3'
miRNA:   3'- -GGUGCGaaGG-GCGG--UUGUGGGGGaAG- -5'
5594 5' -57.6 NC_001806.1 + 137823 0.67 0.809227
Target:  5'- gUACGCggCCCGCCuGCGgCCCgUg- -3'
miRNA:   3'- gGUGCGaaGGGCGGuUGUgGGGgAag -5'
5594 5' -57.6 NC_001806.1 + 136434 0.66 0.842579
Target:  5'- -aACGCccucagacCCUGCgucACACCCCCUUCu -3'
miRNA:   3'- ggUGCGaa------GGGCGgu-UGUGGGGGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.